# HG changeset patch
# User petr-novak
# Date 1690446912 0
# Node ID 1d1dc045695ec111beedd6f6063653ef7936be5c
# Parent  3c121bee9253f510f285f40d73fd367e502c25e9
Uploaded

diff -r 3c121bee9253 -r 1d1dc045695e repex_tarean.xml
--- a/repex_tarean.xml	Thu Jul 27 08:34:54 2023 +0000
+++ b/repex_tarean.xml	Thu Jul 27 08:35:12 2023 +0000
@@ -34,16 +34,16 @@
     zip -r  ${ReportArchive}.zip * &&
     mv ${ReportArchive}.zip ${ReportArchive} &&
     cp index.html ${ReportFile} &&
-    mkdir ${ReportFile.files_path} &&
-    cp -r --parents libdir ${ReportFile.files_path} &&
-    cp -r --parents seqclust/clustering/superclusters ${ReportFile.files_path} &&
-    cp -r --parents seqclust/clustering/clusters ${ReportFile.files_path} &&
-    cp seqclust/clustering/hitsort.cls ${ReportFile.files_path}/seqclust/clustering/hitsort.cls &&
-    cp *.png ${ReportFile.files_path}/ &&
-    cp *.csv ${ReportFile.files_path}/ &&
-    cp *.html ${ReportFile.files_path}/  &&
-    cp *.css ${ReportFile.files_path}/  &&
-    cp *.fasta ${ReportFile.files_path}/ 2>>$log  && rm -r ../tarean_output || :
+    mkdir -p ${ReportFile.extra_files_path} &&
+    cp -r --parents libdir ${ReportFile.extra_files_path} &&
+    cp -r --parents seqclust/clustering/superclusters ${ReportFile.extra_files_path} &&
+    cp -r --parents seqclust/clustering/clusters ${ReportFile.extra_files_path} &&
+    cp seqclust/clustering/hitsort.cls ${ReportFile.extra_files_path}/seqclust/clustering/hitsort.cls &&
+    cp *.png ${ReportFile.extra_files_path}/ &&
+    cp *.csv ${ReportFile.extra_files_path}/ &&
+    cp *.html ${ReportFile.extra_files_path}/  &&
+    cp *.css ${ReportFile.extra_files_path}/  &&
+    cp *.fasta ${ReportFile.extra_files_path}/ 2>>$log  && rm -r ../tarean_output || :
 
     
   </command>