# HG changeset patch
# User petr-novak
# Date 1617955793 0
# Node ID 397394c00bf7d98b9c38b708563d156c55572fbd
# Parent  72c028e3e70ee454cbba4c27cfc80efcd7db789c
Uploaded

diff -r 72c028e3e70e -r 397394c00bf7 repex_full_clustering.xml
--- a/repex_full_clustering.xml	Thu Apr 08 10:31:53 2021 +0000
+++ b/repex_full_clustering.xml	Fri Apr 09 08:09:53 2021 +0000
@@ -130,7 +130,28 @@
     </when>
   </conditional>
 
-  
+       <conditional name="queue_definition">
+               <param name="queue_select" type="select" label="Select queue">
+                 <option value="basic_fast_queue">basic (max runtime 2 days, 4 GB RAM)</option>
+                 <option value="long_slow_queue">long (max runtime 2 weeks, 64 GB RAM)</option>
+                 <option value="extra_long_slow_queue">extra long (max runtime 4 weeks, 64 GB RAM)</option>
+               </param>
+               <when value="basic_fast_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=10:mem=32gb:scratch_local=50gb -l walltime=48:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=4000000,TAREAN_CPU=4" />
+               </when>
+
+               <when value="long_slow_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=336:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" />
+               </when>
+               <when value="extra_long_slow_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=720:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" />
+               </when>
+     </conditional>
+ 
+
 
  </inputs>
     <outputs>
diff -r 72c028e3e70e -r 397394c00bf7 repex_tarean.xml
--- a/repex_tarean.xml	Thu Apr 08 10:31:53 2021 +0000
+++ b/repex_tarean.xml	Fri Apr 09 08:09:53 2021 +0000
@@ -97,7 +97,28 @@
       </when>
     </conditional>
 
-    
+         <conditional name="queue_definition">
+               <param name="queue_select" type="select" label="Select queue">
+                 <option value="basic_fast_queue">basic (max runtime 2 days, 4 GB RAM)</option>
+                 <option value="long_slow_queue">long (max runtime 2 weeks, 64 GB RAM)</option>
+                 <option value="extra_long_slow_queue">extra long (max runtime 4 weeks, 64 GB RAM)</option>
+               </param>
+               <when value="basic_fast_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=10:mem=32gb:scratch_local=50gb -l walltime=48:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=4000000,TAREAN_CPU=4" />
+               </when>
+
+               <when value="long_slow_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=336:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" />
+               </when>
+               <when value="extra_long_slow_queue">
+                 <param name="queue_specification" type="text" label="Modify parameters (optional)"
+                        value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=720:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" />
+               </when>
+     </conditional>
+ 
+
 
   </inputs>
   <outputs>