Mercurial > repos > petr-novak > repeatexplorer2_testing
changeset 6:4b3af335dca8 draft
Uploaded
| author | petr-novak |
|---|---|
| date | Wed, 14 Apr 2021 06:20:12 +0000 |
| parents | 397394c00bf7 |
| children | ffe53359f758 |
| files | repex_full_clustering.xml repex_tarean.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/repex_full_clustering.xml Fri Apr 09 08:09:53 2021 +0000 +++ b/repex_full_clustering.xml Wed Apr 14 06:20:12 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8" > +<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2." > <stdio> <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" /> <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> @@ -8,7 +8,7 @@ </stdio> <description>Improved version or repeat discovery and characterization using graph-based sequence clustering</description> <requirements> - <container type="singularity">shub://repeatexplorer/repex_tarean:0.3.8.dbaa07f</container> + <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.8-dbaa07f</container> </requirements> <command> export PYTHONHASHSEED=0;
--- a/repex_tarean.xml Fri Apr 09 08:09:53 2021 +0000 +++ b/repex_tarean.xml Wed Apr 14 06:20:12 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="tarean" name="Tandem Repeat Analyzer" version="2.3.8" > +<tool id="tarean" name="Tandem Repeat Analyzer" version="2." > <stdio> <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> <regex match="error" source="stderr" level="fatal" description="Unknown error" /> @@ -7,7 +7,7 @@ </stdio> <description>Identification of genomic tandem repeats from NGS data</description> <requirements> - <container type="singularity">shub://repeatexplorer/repex_tarean:0.3.8.dbaa07f</container> + <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.8-dbaa07f</container> </requirements> <command detect_errors="exit_code"> export PYTHONHASHSEED=0;