Mercurial > repos > petr-novak > repeatexplorer2_testing
changeset 26:e6eba137691f draft
Uploaded
| author | petr-novak |
|---|---|
| date | Tue, 05 Nov 2024 13:48:13 +0000 |
| parents | a27646c27090 |
| children | 792914356c37 |
| files | repex_full_clustering.xml |
| diffstat | 1 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/repex_full_clustering.xml Wed Jun 05 08:47:44 2024 +0000 +++ b/repex_full_clustering.xml Tue Nov 05 13:48:13 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.11.1" > +<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.12.1" > <stdio> <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" /> <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> @@ -8,7 +8,7 @@ </stdio> <description>Improved version or repeat discovery and characterization using graph-based sequence clustering</description> <requirements> - <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.11-579a65d</container> + <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.12-7a7dc9e</container> </requirements> <command> export PYTHONHASHSEED=0; @@ -72,8 +72,9 @@ <param name="taxon" label="Select taxon and protein domain database version (REXdb)" type="select" help="Reference database of transposable element protein domains - REXdb - is used for annotation of repeats"> - <option value="VIRIDIPLANTAE3.0" selected="true">Viridiplantae version 3.0 </option> - <option value="VIRIDIPLANTAE2.2" selected="true">Viridiplantae version 2.2</option> + <option value="VIRIDIPLANTAE4.0" selected="true">Viridiplantae version 4.0 </option> + <option value="VIRIDIPLANTAE3.0" >Viridiplantae version 3.0 </option> + <option value="VIRIDIPLANTAE2.2" >Viridiplantae version 2.2</option> <option value="METAZOA3.0" >Metazoa version 3.0</option> <option value="METAZOA2.0" >Metazoa version 2.0</option> <!-- Modify setting in config.py accordingly -->