Mercurial > repos > petr-novak > repeatrxplorer

diff lib/config.R @ 0:1d1b9e1b2e2f draft

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author petr-novak
date Thu, 19 Dec 2019 10:24:45 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lib/config.R	Thu Dec 19 10:24:45 2019 -0500
@@ -0,0 +1,11 @@
+#/usr/bin/env Rscript
+TANDEM_RANKS = c(
+      "Putative satellites (high confidence)" =  1,
+      "Putative satellites (low confidence)" = 2,
+      "Putative LTR elements" = 3,
+      "rDNA" = 4,
+      "Other" = 0
+)
+# inverted - key value
+RANKS_TANDEM = names(TANDEM_RANKS)
+names(RANKS_TANDEM) = TANDEM_RANKS