comparison tidecluster.xml @ 2:299f14a6050a draft

planemo upload for repository https://github.com/kavonrtep/galaxy_packages commit 65066fa2cd844c8ae882c4ba9bc4e124eada8ffd

1:eac66eb6a5cf

        &&
        mkdir -p ${tarean_report.extra_files_path}
        &&
        cp -r tidecluster_tarean ${tarean_report.extra_files_path}/
        &&
        zip -r output.zip *


        #if $library:
        &&
        cp tidecluster_annotation.gff3 '$gff3_annotation'
        &&
        cp tidecluster_annotation.tsv '$csv_annotation'

              label="${tool.name} on ${on_string}: GFF3 TideCluster Output"/>
        <data name="gff3_annotation" format="gff3"
              label="${tool.name} on ${on_string}: GFF3 TideCluster Annotated Output">
            <filter>library is not None</filter>
        </data>
        <data name="csv_annotation" format="tsv"
              label="${tool.name} on ${on_string}: TSV TideCluster Annotated Output">
            <filter>library is not None</filter>
        </data>
        <data name="tarean_report" format="html"
              label="${tool.name} on ${on_string}: TAREAN Report"/>

2:299f14a6050a

        &&
        mkdir -p ${tarean_report.extra_files_path}
        &&
        cp -r tidecluster_tarean ${tarean_report.extra_files_path}/
        &&
        cp tidecluster_consensus_dimer_library.fasta ${trc_library}
        &&
        zip -r output.zip *
        #if $library:
        &&
        cp tidecluster_annotation.gff3 '$gff3_annotation'
        &&
        cp tidecluster_annotation.tsv '$csv_annotation'

              label="${tool.name} on ${on_string}: GFF3 TideCluster Output"/>
        <data name="gff3_annotation" format="gff3"
              label="${tool.name} on ${on_string}: GFF3 TideCluster Annotated Output">
            <filter>library is not None</filter>
        </data>

        <data name="csv_annotation" format="tsv"
              label="${tool.name} on ${on_string}: TSV TideCluster Annotated Output">
            <filter>library is not None</filter>
        </data>

        <data name="trc_library" format="fasta"
              label="${tool.name} on ${on_string}: Library of tandem repeats"/>
        <data name="tarean_report" format="html"
              label="${tool.name} on ${on_string}: TAREAN Report"/>