Mercurial > repos > petr-novak > tidecluster

comparison tidecluster.xml @ 10:971dbc97e607 draft default tip

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planemo upload for repository https://github.com/kavonrtep/galaxy_packages commit 5269b4297ea690bce0802c3c1cb217f24290f1ec-dirty
author petr-novak
date Fri, 08 Mar 2024 13:16:45 +0000
parents af85dfc8676d
children
comparison
equal deleted inserted replaced
9:440796be7576 10:971dbc97e607
20 && 20 &&
21 cp tidecluster_tidehunter.gff3 '$gff3_tidehunter' 21 cp tidecluster_tidehunter.gff3 '$gff3_tidehunter'
22 && 22 &&
23 cp tidecluster_clustering.gff3 '$gff3_clustering' 23 cp tidecluster_clustering.gff3 '$gff3_clustering'
24 && 24 &&
25 if [ -f tidecluster_tarean_report.html ]; then cp tidecluster_tarean_report.html '$tarean_report'; fi 25 if [ -f tidecluster_index.html ]; then cp tidecluster_index.html '$tarean_report'; fi
26 && 26 &&
27 mkdir -p ${tarean_report.extra_files_path} 27 mkdir -p ${tarean_report.extra_files_path}
28 && 28 &&
29 if [ -d tidecluster_tarean ]; then cp -r tidecluster_tarean ${tarean_report.extra_files_path}/; fi 29 if [ -d tidecluster_tarean ]; then cp -r tidecluster_tarean ${tarean_report.extra_files_path}/; fi
30 &&
31 if [ -d tidecluster_kite ]; then cp -r tidecluster_kite ${tarean_report.extra_files_path}/; fi
32 &&
33 if [ -f tidecluster_kite_report.html ]; then cp tidecluster_kite_report.html ${tarean_report.extra_files_path}/; fi
34 &&
35 if [ -f tidecluster_tarean_report.html ]; then cp tidecluster_tarean_report.html ${tarean_report.extra_files_path}/; fi
36
30 && 37 &&
31 if [ -f tidecluster_consensus_dimer_library.fasta ]; then cp tidecluster_consensus_dimer_library.fasta ${trc_library}; fi 38 if [ -f tidecluster_consensus_dimer_library.fasta ]; then cp tidecluster_consensus_dimer_library.fasta ${trc_library}; fi
32 && 39 &&
33 zip -r output.zip * 40 zip -r output.zip *
34 #if $library: 41 #if $library: