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view gff2tabular.xml @ 0:696e702ebf74 draft

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author petr-novak
date Mon, 09 May 2022 08:26:30 +0000
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<tool id="gff2tabular" name="GFF to Tabular" version="0.1.0">
    <description>converter</description>
    <requirements>
        <requirement type="package">R</requirement>
        <requirement type="package">bioconductor-rtracklayer</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        Rscript ${__tool_directory__}/gff2tabular.R '$inputgff' '$output'
    ]]></command>
    <inputs>
      <param type="data" name="inputgff" format="gff" />
    </inputs>
    <outputs>
        <data name="output" format="tabular" />
    </outputs>
    <help><![CDATA[
        Convert gff2/gff3 to tab delimited file
    ]]></help>
</tool>