view NGSrich_0.5.5/src/middlewares/ReadCounter.java @ 0:89ad0a9cca52 default tip

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package middlewares;
/**
 * Counter for the reads on targets (+/- 0/100/200) and the reads overlapping 
 * targets (+/- 0/100/200).
 *  
 * @author Ali Abdallah
 * @version 14.07.2011
 * @since jdk 1.6.0
 */
public class ReadCounter {

	// Self explanatory.
	private int on, on100, on200, over, over100, over200;

	public ReadCounter(){on=0; on100=0; on200=0; over=0; over100=0; over200=0;}
	
	public void incOn(){on++;}
	public void incOn100(){on100++;}
	public void incOn200(){on200++;}
	
	public void incOver(){over++;}
	public void incOver100(){over100++;}
	public void incOver200(){over200++;}
	
	public int on(){return on;}
	public int on100(){return on100;}
	public int on200(){return on200;}

	public int over(){return over;}
	public int over100(){return over100;}
	public int over200(){return over200;}

}