comparison nist_wrapper.xml @ 3:910ebd2a6826

fix

2:f6da901ffff8

		nist_wrapper.py
		"~/.wine/drive_c/NIST"
		$nistIniFile
		$spectraFile
		$outputFile
	</command>
<inputs>
	<param name="spectraFile" type="data" format="msp" label="Spectra file (.MSP)" help="E.g. file produced by MsClust"/>

	<param name="hitsToReport" type="integer" size="10" value="3" label="Number of matches to report per spetrum" 

</configfiles>

<outputs>
	<data name="outputFile" format="tabular" label="${tool.name} on ${on_string} - NIST library matches (TSV)"/>
	<data name="outputLog" format="txt" label="${tool.name} on ${on_string} - LOG" hidden="True"/>
	<data name="htmlReportFile" format="html" label="${tool.name} on ${on_string} - NIST matches report (HTML)"/>
</outputs>
<tests>
	<test>

3:910ebd2a6826

		nist_wrapper.py
		"~/.wine/drive_c/NIST"
		$nistIniFile
		$spectraFile
		$outputFile
		$outputFileFinal
		$htmlReportFile
		$htmlReportFile.files_path
	</command>
<inputs>
	<param name="spectraFile" type="data" format="msp" label="Spectra file (.MSP)" help="E.g. file produced by MsClust"/>

	<param name="hitsToReport" type="integer" size="10" value="3" label="Number of matches to report per spetrum" 

</configfiles>

<outputs>
	<data name="outputFile" format="tabular" label="${tool.name} on ${on_string} - NIST library matches (TSV)"/>
	<data name="outputFileFinal" format="tabular" label="${tool.name} on ${on_string} - NIST library matches (TSV)"/>
	<data name="outputLog" format="txt" label="${tool.name} on ${on_string} - LOG" hidden="True"/>
	<data name="htmlReportFile" format="html" label="${tool.name} on ${on_string} - NIST matches report (HTML)"/>
</outputs>
<tests>
	<test>