Mercurial > repos > pieterlukasse > primo_multiomics
annotate README.rst @ 5:eb0b7889dd08
added more parameters/options and made Ontology observations file optional;
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Fri, 01 Aug 2014 17:20:02 +0200 |
| parents | 5bc82cf5439b |
| children | ce9228263148 |
| rev | line source |
|---|---|
| 0 | 1 PRIMO-multi-omics toolset & Galaxy wrappers |
| 2 =========================================== | |
| 3 | |
| 4 Multi-omics module of Plant Research International's Mass Spectrometry (PRIMO) toolsuite. | |
| 5 This toolset consists of custom tools to facilitate post processing | |
| 6 and integration of different omics datasets. | |
| 7 | |
| 8 Can be used in combination with PRIMS-proteomics (prims_proteomics package) and | |
| 9 with PRIMS-metabolomics (prims_metabolomics package). | |
| 10 | |
| 11 Copyright 2010-2014 by Pieter Lukasse, Plant Research International (PRI), | |
|
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eb0b7889dd08
added more parameters/options and made Ontology observations file optional;
pieter.lukasse@wur.nl
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12 Wageningen UR, The Netherlands. All rights reserved. See the license text below. |
| 0 | 13 |
| 14 Galaxy wrappers and installation are available from the Galaxy Tool Shed at: | |
| 15 http://toolshed.g2.bx.psu.edu/view/pieterlukasse/primo_multiomics | |
| 16 | |
| 17 History | |
| 18 ======= | |
| 19 | |
| 20 ============== ====================================================================== | |
| 21 Date Changes | |
| 22 -------------- ---------------------------------------------------------------------- | |
| 23 May 2014 * first release via Tool Shed | |
| 24 ============== ====================================================================== | |
| 25 | |
| 26 Tool Versioning | |
| 27 =============== | |
| 28 | |
| 29 PRIMO tools will have versions of the form X.Y.Z. Versions | |
| 30 differing only after the second decimal should be completely | |
| 31 compatible with each other. Breaking changes should result in an | |
| 32 increment of the number before and/or after the first decimal. All | |
| 33 tools of version less than 1.0.0 should be considered beta. | |
| 34 | |
| 35 | |
| 36 Bug Reports & other questions | |
| 37 ============================= | |
| 38 | |
| 39 For the time being issues can be reported via the contact form at: | |
| 40 http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm | |
| 41 | |
| 42 Developers, Contributions & Collaborations | |
| 43 ========================================== | |
| 44 | |
| 45 If you wish to join forces and collaborate on some of the | |
| 46 tools do not hesitate to contact Pieter Lukasse via the contact form above. | |
| 47 | |
| 48 | |
| 49 License (Apache, Version 2.0) | |
| 50 ============================= | |
| 51 | |
| 52 Copyright 2013 Pieter Lukasse, Plant Research International (PRI). | |
| 53 | |
| 54 Licensed under the Apache License, Version 2.0 (the "License"); | |
| 55 you may not use this software except in compliance with the License. | |
| 56 You may obtain a copy of the License at | |
| 57 | |
| 58 http://www.apache.org/licenses/LICENSE-2.0 | |
| 59 | |
| 60 Unless required by applicable law or agreed to in writing, software | |
| 61 distributed under the License is distributed on an "AS IS" BASIS, | |
| 62 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| 63 See the License for the specific language governing permissions and | |
| 64 limitations under the License. | |
| 65 |