Mercurial > repos > pieterlukasse > primo_multiomics

comparison term_mapper.xml @ 8:97e10319d86f

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
supporting column indexes
author pieter.lukasse@wur.nl
date Mon, 23 Mar 2015 22:11:39 +0100
parents ce9228263148
children 89264646e458
comparison
equal deleted inserted replaced
7:ce9228263148 8:97e10319d86f
30 -outputObservationsFileName $outputObservationsFileName 30 -outputObservationsFileName $outputObservationsFileName
31 -quantifColumn "$genObservations.quantifColumn" 31 -quantifColumn "$genObservations.quantifColumn"
32 #end if 32 #end if
33 33
34 -mappedTermsColName $mappedTermsColName 34 -mappedTermsColName $mappedTermsColName
35 -numberOfHeaderLines $numberOfHeaderLines
35 36
36 </command> 37 </command>
37 38
38 <inputs> 39 <inputs>
39 40
55 </when> 56 </when>
56 </conditional> 57 </conditional>
57 58
58 <!-- =================== cross-reference part ============== --> 59 <!-- =================== cross-reference part ============== -->
59 <param name="mappingFileName" type="data" format="tabular,csv" label="Lookup table (TSV/CSV)" help="Simple mapping file between the coding scheme used to another scheme"/> 60 <param name="mappingFileName" type="data" format="tabular,csv" label="Lookup table (TSV/CSV)" help="Simple mapping file between the coding scheme used to another scheme"/>
61 <param name="numberOfHeaderLines" type="select" label="Number of header lines in mapping file"
62 help="If this is '0', use the column numbers starting from 1 as the 'names' in the paramters below.">
63 <option value="0" >0</option>
64 <option value="1" selected="true">1</option>
65 </param>
66
67
60 <param name="mappingFileIdColName" type="text" size="50" value="" label="ID column name (in lookup table)" help="Name of the ID column for the lookup"/> 68 <param name="mappingFileIdColName" type="text" size="50" value="" label="ID column name (in lookup table)" help="Name of the ID column for the lookup"/>
61 69
62 <conditional name="mappingIdCol"> 70 <conditional name="mappingIdCol">
63 <param name="mappingIdHasPrefix" type="boolean" truevalue="Yes" falsevalue="No" checked="false" 71 <param name="mappingIdHasPrefix" type="boolean" truevalue="Yes" falsevalue="No" checked="false"
64 label="ID values have a prefix"/> 72 label="ID values have a prefix"/>
92 help="Name of the column containing the quantification values (in the given input file)"/> 100 help="Name of the column containing the quantification values (in the given input file)"/>
93 </when> 101 </when>
94 <when value="No"> 102 <when value="No">
95 </when> 103 </when>
96 </conditional> 104 </conditional>
105
106
107
108
97 109
98 </inputs> 110 </inputs>
99 <outputs> 111 <outputs>
100 #if isinstance( $inputFileName.datatype, $__app__.datatypes_registry.get_datatype_by_extension('tabular').__class__): 112 #if isinstance( $inputFileName.datatype, $__app__.datatypes_registry.get_datatype_by_extension('tabular').__class__):
101 <data name="outputFileName" format="tabular" label="${tool.name} on ${on_string}: annotated file " ></data> 113 <data name="outputFileName" format="tabular" label="${tool.name} on ${on_string}: annotated file " ></data>