Mercurial > repos > pieterlukasse > primo_multiomics

comparison ontologyvis.xml @ 13:a4c4656ad9e0

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some improvements/fixes?
author pieter.lukasse@wur.nl
date Sat, 28 Mar 2015 21:21:32 +0100
parents 65850557aae9
children
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12:fb265c83b884 13:a4c4656ad9e0
67 label="Display individual observation items" 67 label="Display individual observation items"
68 help="Whether to render the individual observation items in the visualization. Disable this if you expect many (thousands) of 68 help="Whether to render the individual observation items in the visualization. Disable this if you expect many (thousands) of
69 individual observation items per ontology entry."/> 69 individual observation items per ontology entry."/>
70 70
71 <param name="oneTermOnlyAnnotation" type="boolean" checked="true" 71 <param name="oneTermOnlyAnnotation" type="boolean" checked="true"
72 label="Use only one annotation per observation items" 72 label="Try to use only one term per observation items"
73 help="Check this to force each observation item to keep only one of its ontology annotations, 73 help="If checked, the algorithm will try to reduce the number of terms to which an
74 as a form of redundancy reduction. If checked, the algorithm will 74 observation item is associated. The observation item can still appear in more than one
75 keep the ontology annotation that has most other (sibling) observation items."/> 75 term circle, but the algorithm will try to reduce this by preferring the bigger circles."/>
76 76
77 <param name="allowMultipleSuperClasses" type="boolean" checked="false" 77 <param name="allowMultipleSuperClasses" type="boolean" checked="false"
78 label="Allow ontology terms to be nested under more than one super class" 78 label="Allow ontology terms to be nested under more than one super class"
79 help="Some ontology classes have multiple super classes. Check this to allow 79 help="Some ontology classes can have multiple super classes. Check this to allow
80 nesting the classes under each of its super classes. Not checking this option 80 nesting the classes under each of its super classes. Even when NOT checking this option,
81 will cause the ontology classes that have more than one super class to 81 the ontology classes can still appear in more than one
82 be nested under the super class that has (initially) most observation items 82 term circle/superclass, but the algorithm will try to reduce this by preferring the bigger circles."/>
83 under it (directly or in its sub classes)."/>
84 83
85 </inputs> 84 </inputs>
86 <outputs> 85 <outputs>
87 <data name="htmlReportFile" format="html" label="${tool.name} on ${on_string}: ontology observations report (HTML)"></data> 86 <data name="htmlReportFile" format="html" label="${tool.name} on ${on_string}: ontology observations report (HTML)"></data>
88 </outputs> 87 </outputs>