comparison tool_dependencies.xml @ 11:1a6fa343b981

Adding auto install for proteowizard dependency

10:f47b24cccf88

        </install>
        <readme>
Ensures XTandem is installed. 
        </readme>
    </package>
	<set_environment version="1.0">
        <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable>   
    </set_environment>
</tool_dependency>

11:1a6fa343b981

        </install>
        <readme>
Ensures XTandem is installed. 
        </readme>
    </package>
    <package name="proteowizard" version="3.05622">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_masscomb/raw-file/tip/pwiz-bin-linux-x86_64-gcc48-release-3_0_5622.tar.bz2</action>
                <action type="move_directory_files">
					<source_directory>.</source_directory>
					<destination_directory>$INSTALL_DIR/pwiz_3_0_5622</destination_directory>
				</action>
				<action type="set_environment">
                    <environment_variable name="PWIZ_3_0_5622_PATH" action="set_to">$INSTALL_DIR/pwiz_3_0_5622</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Ensures ProteoWizard binaries are installed. 
        </readme>
    </package>
	<set_environment version="1.0">
        <environment_variable name="PWIZ_3_0_5622_PATH" action="set_to">$INSTALL_DIR/pwiz_3_0_5622</environment_variable>   
    </set_environment>
</tool_dependency>