Mercurial > repos > pieterlukasse > prims_masscomb
comparison masscomb_dbsearch_converter.xml @ 12:e38e97bc902d
added comment
author | pieter.lukasse@wur.nl |
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date | Fri, 23 Jan 2015 15:45:50 +0100 |
parents | 1a6fa343b981 |
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11:1a6fa343b981 | 12:e38e97bc902d |
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43 </when> | 43 </when> |
44 <when value="omssa"> | 44 <when value="omssa"> |
45 <param name="inputFile" type="data" format="omx" label="MS/MS search results"/> | 45 <param name="inputFile" type="data" format="omx" label="MS/MS search results"/> |
46 </when> | 46 </when> |
47 <when value="proteomediscoverer_pepxml"> | 47 <when value="proteomediscoverer_pepxml"> |
48 <param name="inputFile" type="data" format="pepxml" label="MS/MS search results (pepxml)"/> | 48 <param name="inputFile" type="data" format="any" label="MS/MS search results (pepxml)"/> |
49 </when> | 49 </when> |
50 </conditional> | 50 </conditional> |
51 </when> | 51 </when> |
52 <when value="fileSet"> | 52 <when value="fileSet"> |
53 <conditional name="inputFormatType"> | 53 <conditional name="inputFormatType"> |
68 </conditional> | 68 </conditional> |
69 </when> | 69 </when> |
70 </conditional> | 70 </conditional> |
71 <param name="outputMsMsFragmentationData" type="boolean" checked="false" | 71 <param name="outputMsMsFragmentationData" type="boolean" checked="false" |
72 label="Output MS/MS fragmentation data" | 72 label="Output MS/MS fragmentation data" |
73 help="NB: this will add to the output also the fragment ions related to each peptide identification"/> | 73 help="NB: this will add to the output also the fragment ions related to each peptide identification. |
74 NB2: Fragment ion annotation data is | |
75 inferred based on new calculations triggered by this conversion tool. | |
76 This is done because fragment ion annotation information is not present | |
77 in X!Tandem file (X!Tandem SLEDGEHAMMER (2013.09.01) and previous)"/> | |
74 | 78 |
75 </inputs> | 79 </inputs> |
76 <outputs> | 80 <outputs> |
77 <data name="outputFile" format="mzid" label="${tool.name} (to MzIdentML) on ${on_string} "> | 81 <data name="outputFile" format="mzid" label="${tool.name} (to MzIdentML) on ${on_string} "> |
78 <change_format> | 82 <change_format> |