Mercurial > repos > pieterlukasse > prims_masscomb

diff tool_dependencies.xml @ 0:d6001e8d7441

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author pieter.lukasse@wur.nl
date Wed, 08 Jan 2014 11:34:51 +0100
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children 1a6fa343b981
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jan 08 11:34:51 2014 +0100
@@ -0,0 +1,28 @@
+<?xml version="1.0"?>
+<tool_dependency>
+<!-- see also http://wiki.galaxyproject.org/ToolShedToolFeatures for syntax help -->
+    <package name="xtandem" version="12.10011">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">ftp://ftp.thegpm.org/projects/tandem/source/2011-12-01/tandem-linux-12-10-01-1.zip</action>
+                <!--<action type="shell_command">make clean</action>
+                <action type="shell_command">make</action>-->
+                <action type="move_directory_files">
+					<source_directory>../tandem-linux-12-10-01-1</source_directory>
+					<destination_directory>$INSTALL_DIR/tandem-linux-12-10-01-1</destination_directory>
+				</action>
+				<action type="shell_command">chmod 755 $INSTALL_DIR/tandem-linux-12-10-01-1/bin/tandem.exe</action>
+				<!--<action type="chmod"><file mode="755">$INSTALL_DIR/tandem-linux-12-10-01-1/bin/tandem.exe</file><action>-->
+                <action type="set_environment">
+                    <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Ensures XTandem is installed. 
+        </readme>
+    </package>
+	<set_environment version="1.0">
+        <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable>   
+    </set_environment>
+</tool_dependency>
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