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1 PRIMS-metabolomics toolset & Galaxy wrappers
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2 ============================================
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3
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4 Metabolomics module of Plant Research International's Mass Spectrometry (PRIMS) toolsuite.
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5 This toolset consists of custom tools to enable metabolite identifications and
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6 Retention Index (RI) based Quality Control (RIQC) for Mass Spectrometry metabolomics data.
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7
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8 Copyright:
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9 * 2012: NIST_UTIL and RIQC tools: Copyright (c) 2012 Maarten Kooyman and Marcel Kempenaar, NBIC BRS
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10 * 2013: all tools: Copyright (c) 2013 by Pieter Lukasse, Plant Research International (PRI),
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11 Wageningen, The Netherlands. All rights reserved. See the license text below.
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12
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13 Galaxy wrappers and installation are available from the Galaxy Tool Shed at:
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14 http://toolshed.g2.bx.psu.edu/view/pieterlukasse/prims_metabolomics
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15
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16 History
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17 =======
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18
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19 ============== ======================================================================
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20 Date Changes
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21 -------------- ----------------------------------------------------------------------
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22 January 2014 * first release via Tool Shed, combining the RIQC and MsClust in a
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23 single package (this package)
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24 * integration with METEXP software (data store for metabolomics
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25 experiments with respective metadata and identifications)
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26 2013 * hand-over of the NIST_UTIL and RIQC tools from the NBIC team to
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27 Plant Research International
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28 2012 * development of MsClust 2.0, making it also suitable for Galaxy
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29 <2011 * development and publication of MsClust 1.0
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30 ============== ======================================================================
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31
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32 Tool Versioning
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33 ===============
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34
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35 PRIMS tools will have versions of the form X.Y.Z. Versions
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36 differing only after the second decimal should be completely
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37 compatible with each other. Breaking changes should result in an
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38 increment of the number before and/or after the first decimal. All
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39 tools of version less than 1.0.0 should be considered beta.
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40
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41
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42 Bug Reports & other questions
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43 =============================
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44
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45 For the time being issues can be reported via the contact form at:
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46 http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm
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47
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48 Developers, Contributions & Collaborations
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49 ==========================================
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50
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51 If you wish to join forces and collaborate on some of the
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52 tools do not hesitate to contact Pieter Lukasse via the contact form above.
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53
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54
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55 License (Apache, Version 2.0)
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56 =============================
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57
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58 Copyright 2013 Pieter Lukasse, Plant Research International (PRI).
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59
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60 Licensed under the Apache License, Version 2.0 (the "License");
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61 you may not use this software except in compliance with the License.
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62 You may obtain a copy of the License at
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63
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64 http://www.apache.org/licenses/LICENSE-2.0
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65
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66 Unless required by applicable law or agreed to in writing, software
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67 distributed under the License is distributed on an "AS IS" BASIS,
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68 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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69 See the License for the specific language governing permissions and
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70 limitations under the License.
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71 |
