Mercurial > repos > pieterlukasse > prims_metabolomics
comparison rankfilter_GCMS/pdfread.py @ 60:35f506f30ae4
fixed small rule in pdfread, and other small enhancements
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Fri, 19 Dec 2014 11:30:22 +0100 |
| parents | 637830ac8bcd |
| children | d685210eef3e |
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| 59:458e05d1d172 | 60:35f506f30ae4 |
|---|---|
| 73 | 73 |
| 74 # uggly workaround for the cases where there ends up to be no space between the name and the formula: exaustive | 74 # uggly workaround for the cases where there ends up to be no space between the name and the formula: exaustive |
| 75 # replaces of known cases by the same with a white space: | 75 # replaces of known cases by the same with a white space: |
| 76 name_tmp = name_tmp.replace('lC', 'l C').replace(']C', '] C').replace('sC', 's C').replace('9C', '9 C').replace('.C', '. C') | 76 name_tmp = name_tmp.replace('lC', 'l C').replace(']C', '] C').replace('sC', 's C').replace('9C', '9 C').replace('.C', '. C') |
| 77 name_tmp = name_tmp.replace(')C', ') C').replace('eC', 'e C').replace('yC', 'y C').replace('oC', 'o C').replace('-C', '- C').replace('dC', 'd C').replace('rC', 'r C') | 77 name_tmp = name_tmp.replace(')C', ') C').replace('eC', 'e C').replace('yC', 'y C').replace('oC', 'o C').replace('-C', '- C').replace('dC', 'd C').replace('rC', 'r C') |
| 78 name_tmp = name_tmp.replace('-, LC', '-, L C').replace('-, DC', '-, D C') | 78 name_tmp = name_tmp.replace(', LC', ', L C').replace(', DC', ', D C') |
| 79 | 79 |
| 80 name.append((' '.join(name_tmp.split(' ')[0:len(name_tmp) - 1])).replace(" ", " ")) | 80 name.append((' '.join(name_tmp.split(' ')[0:len(name_tmp) - 1])).replace(" ", " ")) |
| 81 if name_tmp: | 81 if name_tmp: |
| 82 if name_tmp.split(' ')[-1][0] == 'C' or name_tmp.split(' ')[-1][0] == 'F' or name_tmp.split(' ')[-1][0] == 'H': | 82 if name_tmp.split(' ')[-1][0] == 'C' or name_tmp.split(' ')[-1][0] == 'F' or name_tmp.split(' ')[-1][0] == 'H': |
| 83 formule = (name_tmp.split(' ')[-1]) | 83 formule = (name_tmp.split(' ')[-1]) |