Mercurial > repos > pieterlukasse > prims_metabolomics
comparison xcms_get_mass_eic.xml @ 60:35f506f30ae4
fixed small rule in pdfread, and other small enhancements
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Fri, 19 Dec 2014 11:30:22 +0100 |
| parents | f772a5caa86a |
| children |
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| 59:458e05d1d172 | 60:35f506f30ae4 |
|---|---|
| 14 -1 | 14 -1 |
| 15 "." | 15 "." |
| 16 #else | 16 #else |
| 17 -1 | 17 -1 |
| 18 -1 | 18 -1 |
| 19 $massParameters.mzList | 19 "$massParameters.mzList" |
| 20 $massParameters.mzTolPpm | 20 $massParameters.mzTolPpm |
| 21 #end if | 21 #end if |
| 22 "$sampleNames" | 22 "$sampleNames" |
| 23 $combineSamples | 23 $combineSamples |
| 24 $rtPlotMode | 24 $rtPlotMode |
| 41 </param> | 41 </param> |
| 42 <when value="list"> | 42 <when value="list"> |
| 43 <param name="mzList" type="text" area="true" size="7x70" label="m/z list" | 43 <param name="mzList" type="text" area="true" size="7x70" label="m/z list" |
| 44 help="Comma or line-separated list of m/z values for which to plot an EIC. One EIC will be plotted for each m/z given here."> | 44 help="Comma or line-separated list of m/z values for which to plot an EIC. One EIC will be plotted for each m/z given here."> |
| 45 <sanitizer> | 45 <sanitizer> |
| 46 <!-- this translates from line-separated to comma separated list --> | 46 <!-- this translates from line-separated to comma separated list, removes quotes --> |
| 47 <valid/> | 47 <valid/> |
| 48 <mapping initial="none"> | 48 <mapping initial="none"> |
| 49 <add source=" " target=","/> | 49 <add source=" " target=","/> |
| 50 <add source=" " target=""/> | 50 <add source=" " target=""/> |
| 51 <add source=""" target=""/> | |
| 51 </mapping> | 52 </mapping> |
| 52 </sanitizer> | 53 </sanitizer> |
| 53 </param> | 54 </param> |
| 54 <param name="mzTolPpm" type="integer" size="10" value="5" label="m/z tolerance (ppm)" /> | 55 <param name="mzTolPpm" type="integer" size="10" value="5" label="m/z tolerance (ppm)" /> |
| 55 </when> | 56 </when> |
| 63 <param name="sampleNames" type="text" area="true" size="10x70" label="List of sample names" | 64 <param name="sampleNames" type="text" area="true" size="10x70" label="List of sample names" |
| 64 value="sampleName1,sampleName2,etc" | 65 value="sampleName1,sampleName2,etc" |
| 65 help="Comma or line-separated list of sample names. Here you can specify the subset of samples | 66 help="Comma or line-separated list of sample names. Here you can specify the subset of samples |
| 66 to use for the EIC plots. NB: if your dataset has many samples, specifying a subset here can significantly speed up the processing time." > | 67 to use for the EIC plots. NB: if your dataset has many samples, specifying a subset here can significantly speed up the processing time." > |
| 67 <sanitizer> | 68 <sanitizer> |
| 69 <!-- this translates from line-separated to comma separated list, removes quotes --> | |
| 68 <valid/> | 70 <valid/> |
| 69 <mapping initial="none"> | 71 <mapping initial="none"> |
| 70 <add source=" " target=","/> | 72 <add source=" " target=","/> |
| 71 <add source=" " target=""/> | 73 <add source=" " target=""/> |
| 74 <add source=""" target=""/> | |
| 72 </mapping> | 75 </mapping> |
| 73 </sanitizer> | 76 </sanitizer> |
| 74 </param> | 77 </param> |
| 75 | 78 |
| 76 <param name="combineSamples" type="select" size="50" label="Combine samples in EIC" | 79 <param name="combineSamples" type="select" size="50" label="Combine samples in EIC" |