Mercurial > repos > pieterlukasse > prims_metabolomics
comparison rankfilter_GCMS/test/test_pdfread.py @ 16:53e1eee93430
Last tested version
author | pieter.lukasse@wur.nl |
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date | Fri, 24 Jan 2014 10:38:31 +0100 |
parents | 9d5f4f5f764b |
children | 637830ac8bcd |
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15:777c1c2a17a2 | 16:53e1eee93430 |
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15 | 15 |
16 def test_getPDF(self): | 16 def test_getPDF(self): |
17 ''' | 17 ''' |
18 Tests the reading and parsing of a NIST PDF file | 18 Tests the reading and parsing of a NIST PDF file |
19 ''' | 19 ''' |
20 [hitlist, hitlist_missed] = pdfread.getPDF(self.nist_pdf) | 20 [hitlist, hitlist_missed] = pdfread.getPDF(self.nist_pdf, True) |
21 rows = [hitlist[row] for row in hitlist.keys()] | 21 rows = [hitlist[row] for row in hitlist.keys()] |
22 data = [set(row) for row in zip(*rows)] | 22 data = [set(row) for row in zip(*rows)] |
23 expected_element = set(('12.3', ' Sucrose ', '14', 'undef', ' standards 2009', ' 660', 'not_def', | 23 expected_element = set(('12.3', ' Sucrose ', '14', 'undef', ' standards 2009', ' 660', 'not_def', |
24 '18495-0.142537-21284-2.26544e+07-135', '22.6544', ' 714')) | 24 '18495-0.142537-21284-2.26544e+07-135', '22.6544', ' 714')) |
25 self.failUnless(expected_element in data) | 25 self.failUnless(expected_element in data) |