Mercurial > repos > pieterlukasse > prims_metabolomics
comparison rankfilter_GCMS/pdftotabular.py @ 0:9d5f4f5f764b
Initial commit to toolshed
author | pieter.lukasse@wur.nl |
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date | Thu, 16 Jan 2014 13:10:00 +0100 |
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children | d685210eef3e |
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-1:000000000000 | 0:9d5f4f5f764b |
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1 """ | |
2 Copyright (C) 2013, Pieter Lukasse, Plant Research International, Wageningen | |
3 | |
4 Licensed under the Apache License, Version 2.0 (the "License"); | |
5 you may not use this software except in compliance with the License. | |
6 You may obtain a copy of the License at | |
7 | |
8 http://www.apache.org/licenses/LICENSE-2.0 | |
9 | |
10 Unless required by applicable law or agreed to in writing, software | |
11 distributed under the License is distributed on an "AS IS" BASIS, | |
12 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
13 See the License for the specific language governing permissions and | |
14 limitations under the License. | |
15 | |
16 """ | |
17 | |
18 import sys | |
19 import pdfread | |
20 from subprocess import call | |
21 | |
22 | |
23 def convert_pdftotext(filename, output_file): | |
24 ''' | |
25 Converts PDF file to text | |
26 @param filename: PDF file to parse | |
27 @param output_file: output text file for the hits | |
28 ''' | |
29 | |
30 try: | |
31 call(["pdftotext", filename, output_file]) | |
32 except: | |
33 raise Exception("Error while trying to convert PDF to text") | |
34 | |
35 | |
36 | |
37 | |
38 if __name__ == '__main__': | |
39 pdf_as_text = sys.argv[1]+".txt" | |
40 convert_pdftotext(sys.argv[1], pdf_as_text) | |
41 pdfread.convert_pdftotext2tabular(pdf_as_text, sys.argv[2], sys.argv[3], False) |