Mercurial > repos > pieterlukasse > prims_metabolomics
comparison rankfilter_GCMS/test/test_pdfread.py @ 0:9d5f4f5f764b
Initial commit to toolshed
author | pieter.lukasse@wur.nl |
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date | Thu, 16 Jan 2014 13:10:00 +0100 |
parents | |
children | 53e1eee93430 |
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-1:000000000000 | 0:9d5f4f5f764b |
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1 ''' | |
2 Created on Mar 13, 2012 | |
3 | |
4 @author: marcelk | |
5 ''' | |
6 from GCMS.rankfilter_GCMS import pdfread # @UnresolvedImport | |
7 from pkg_resources import resource_filename # @UnresolvedImport # pylint: disable=E0611 | |
8 import unittest | |
9 | |
10 | |
11 class Test(unittest.TestCase): | |
12 | |
13 def setUp(self): | |
14 self.nist_pdf = resource_filename(__name__, "data/NIST_test_PDF.txt") | |
15 | |
16 def test_getPDF(self): | |
17 ''' | |
18 Tests the reading and parsing of a NIST PDF file | |
19 ''' | |
20 [hitlist, hitlist_missed] = pdfread.getPDF(self.nist_pdf) | |
21 rows = [hitlist[row] for row in hitlist.keys()] | |
22 data = [set(row) for row in zip(*rows)] | |
23 expected_element = set(('12.3', ' Sucrose ', '14', 'undef', ' standards 2009', ' 660', 'not_def', | |
24 '18495-0.142537-21284-2.26544e+07-135', '22.6544', ' 714')) | |
25 self.failUnless(expected_element in data) | |
26 self.failUnless(len(hitlist_missed) != 0) | |
27 | |
28 if __name__ == "__main__": | |
29 #import sys;sys.argv = ['', 'Test.test_getPDF'] | |
30 unittest.main() |