Mercurial > repos > pieterlukasse > prims_metabolomics
comparison primsfilters.py @ 19:c068ed713eb9
fixes on <when> tags
author | pieter.lukasse@wur.nl |
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date | Fri, 31 Jan 2014 12:21:51 +0100 |
parents | |
children | cd4f13119afa |
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18:278680d76d71 | 19:c068ed713eb9 |
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1 import logging | |
2 log = logging.getLogger( __name__ ) | |
3 | |
4 | |
5 def restrict_prims_metabolomics( context, tool ): | |
6 """ | |
7 This tool filter will hide prims_metabolomics tools for non-metabolomics users. | |
8 This can be enabled by adding the following to the | |
9 ``app:main`` section of ``universe_wsgi.ini``:: | |
10 | |
11 tool_filters = primsfilters:restrict_prims_metabolomics | |
12 | |
13 and by adding this file to the folder: | |
14 | |
15 <galaxy-dist>/lib/galaxy/tools/filters | |
16 | |
17 This is optional and can be used in case some control is desired on whom | |
18 gets to see the prims_metabolomics tools. When not using this file and the | |
19 settings mentioned above, all prims_metabolomics tools will be visible to | |
20 all users. | |
21 """ | |
22 # for debugging: import pydevd;pydevd.settrace("L0136815.wurnet.nl") | |
23 user = context.trans.user | |
24 metabolomics_tools = [ "msclust2", "combine_output", "create_poly_model", "lookup_library", "NDIStext2tabular", "rankfilterGCMS_tabular", "filter_on_rank" ] | |
25 found_match = False | |
26 # iterate over the tool (partial)ids and look for a match (this is compatible with tool shed given ids): | |
27 for partial_id in metabolomics_tools: | |
28 if tool.id.find("/"+ partial_id + "/") >= 0: | |
29 found_match = True | |
30 break | |
31 # the second part of this if is compatible with the ids when NOT using tool shed: | |
32 if found_match or tool.id in metabolomics_tools: | |
33 # logging.warn( 'FILTER MATCHED: %s' %(tool.name)) | |
34 | |
35 for user_role in user.roles: | |
36 if user_role.role.name == "PRIMS_METABOLOMICS": | |
37 return True | |
38 # not found to have the role, return false: | |
39 return False | |
40 else: | |
41 # return true for any other tool | |
42 return True |