Mercurial > repos > pieterlukasse > prims_metabolomics
comparison rankfilter_GCMS/pdftotabular.py @ 61:d685210eef3e
fix in pdftotabular tool
author | pieter.lukasse@wur.nl |
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date | Fri, 19 Dec 2014 15:30:13 +0100 |
parents | 9d5f4f5f764b |
children |
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60:35f506f30ae4 | 61:d685210eef3e |
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25 Converts PDF file to text | 25 Converts PDF file to text |
26 @param filename: PDF file to parse | 26 @param filename: PDF file to parse |
27 @param output_file: output text file for the hits | 27 @param output_file: output text file for the hits |
28 ''' | 28 ''' |
29 | 29 |
30 # "-layout" option in pdftotext call below: Maintain (as best as possible) the original physical layout of the text. The | |
31 # default is to 'undo' physical layout (columns, hyphenation, etc.) and output | |
32 # the text in reading order. | |
30 try: | 33 try: |
31 call(["pdftotext", filename, output_file]) | 34 call(["pdftotext", "-layout", filename, output_file]) |
32 except: | 35 except: |
33 raise Exception("Error while trying to convert PDF to text") | 36 raise Exception("Error while trying to convert PDF to text") |
34 | 37 |
35 | 38 |
36 | 39 |