Mercurial > repos > pieterlukasse > prims_metabolomics

comparison match_library.py @ 41:e67149fbff20

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small changes/improvements; new metams and xcms tools
author pieter.lukasse@wur.nl
date Thu, 06 Nov 2014 16:14:44 +0100
parents eabfda6213ae
children
comparison
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40:a7b609941846 41:e67149fbff20
106 returns the list of .txt files found as a dictionary 106 returns the list of .txt files found as a dictionary
107 with file name and full path so that it can 107 with file name and full path so that it can
108 fill a Galaxy drop-down combo box. 108 fill a Galaxy drop-down combo box.
109 109
110 ''' 110 '''
111 files = glob.glob(dir_name + "/*.txt") 111 files = glob.glob(dir_name + "/*.*")
112 if len(files) == 0: 112 if len(files) == 0:
113 # Configuration error: no library files found in <galaxy-home-dir>/" + dir_name : 113 # Configuration error: no library files found in <galaxy-home-dir>/" + dir_name :
114 galaxy_output = [("Configuration error: expected file not found in <galaxy-home-dir>/" + dir_name, "", False)] 114 galaxy_output = [("Configuration error: expected file not found in <galaxy-home-dir>/" + dir_name, "", False)]
115 else: 115 else:
116 galaxy_output = [(str(get_file_name_no_ext(file_name)), str(os.path.abspath(file_name)), False) for file_name in files] 116 galaxy_output = [(str(get_file_name_no_ext(file_name)), str(os.path.abspath(file_name)), False) for file_name in files]