diff query_metexp.xml @ 30:60b53f2aa48a

Small fixes, added microminutes support to MsClust, removed TIC or MsClust output

--- a/query_metexp.xml	Fri May 09 17:11:11 2014 +0200
+++ b/query_metexp.xml	Sat Aug 30 16:14:18 2014 +0200
@@ -1,7 +1,7 @@
 <tool id="query_metexp" 
     name="METEXP - Query Database " 
     version="0.1.0">
-  <description>Query a set of identifications against the METabolomics EXPlorer database</description>
+  <description>Query a set of identifications against the METabolomics EXPeriments database</description>
   <command interpreter="python">
     query_metexp.py 
     $input_file 
@@ -18,6 +18,12 @@
         label="Input file"
     	help="Select a tabular file containing the entries to be queried/verified in the MetExp DB"/>
 		
+  <param name="separation_method" type="select" label="Data type to query">
+  	<option value="GC" selected="True">GC</option>
+    <option value="LC">LC</option>
+  </param>    		     	
+    	
+		
    <param name="casid_col" type="text" size="50"
            label="CAS ID column name"
            value="CAS"
@@ -35,11 +41,7 @@
       		 help="Select the MetExp Database/backend which should be queried" 
       		 dynamic_options='get_directory_files("tool-data/shared/PRIMS-metabolomics/MetExp_Databases")'/>
       		 
-  <param name="separation_method" type="select" label="Data type to query">
-  	<option value="GC" selected="True">GC</option>
-    <option value="LC">LC</option>
-  </param>    		     	
-    
+
   </inputs>
   <outputs>
     <data name="output_result" format="tabular" label="${tool.name} on ${on_string}" />