Mercurial > repos > pieterlukasse > prims_metabolomics

diff rankfilter_text2tabular.xml @ 0:9d5f4f5f764b

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Initial commit to toolshed
author pieter.lukasse@wur.nl
date Thu, 16 Jan 2014 13:10:00 +0100
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rankfilter_text2tabular.xml	Thu Jan 16 13:10:00 2014 +0100
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+<tool id="NDIStext2tabular" name="NIST_UTIL- NIST text to tabular format" version="1.0.2">
+  <description>Convert NIST text to tabular format</description>
+  <command interpreter="python">rankfilter_GCMS/pdftotabular.py $input $output $output_err</command>
+  <inputs>
+    <param format="pdf" name="input" type="data" label="NIST identifications report (PDF)"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" label="${tool.name} output on ${on_string}"  name="output" />
+    <data format="tabular" label="${tool.name} error log"  name="output_err" />
+  </outputs>
+  <help>
+    This tool converts NIST identification report output (PDF) to a tabular format needed for further use with the RIQC tools.
+  </help>
+</tool>