diff msclust.xml @ 19:c068ed713eb9

fixes on <when> tags

--- a/msclust.xml	Tue Jan 28 16:22:15 2014 +0100
+++ b/msclust.xml	Fri Jan 31 12:21:51 2014 +0100
@@ -80,6 +80,10 @@
 			<when value="valueRange">
 				<param name="rangeUpperLimit" type="integer" size="10" value="0" label="Range upper limit" help="values up to this limit will be considered 'generated' values"  />
 			</when>
+			<when value="metot">
+     		</when>
+     		<when value="none">
+     		</when>
 		</conditional>		    
 	 	<conditional name="potDensFuncType">
 		    <param name="type" type="select" size="30" label="Select PD function type =====================================================">
@@ -111,10 +115,12 @@
 		    <when value="original">
 		    <!-- nothing -->
 			</when>
+		    <!-- one idea would be to have clustering specific tolerance values, not reusing the centrotype selection ones
 		    <when value="originalNewTol">
 		      <param name="clust_scan_toler" type="float" size="10" value="10" label="Peak Width, in scans"  />
 		      <param name="clust_scan_slope" type="float" size="10" value="2" label="Peak Width margin softness"  />
 		    </when>
+		    -->
 		    <when value="fuzzyCMeans">
 				<param name="fcmMembershipWeightingExponent" type="float" size="10" value="2.0" label="Membership Weighting Exponent" help="Influences cluster center repositioning in the iterations 1.1 (exploratory) to around 3.0 (conservative)" />
 				<param name="fcmStopCriterion" type="float" size="10" value="0.05" label="Stop Criterion" help="When convergence is 'reached' (e.g. 0.05 means memberships only changed with 5% in last iteration)" />
@@ -169,6 +175,8 @@
      			<param name="micMembershipThreshold" optional="true" type="float" size="10" label="MIC membership threshold" help="Minimum membership a peak should have to be counted in the MIC sum. E.g. 0.8 " />
      			
      		</when>
+     		<when value="No">
+			</when>
      	</conditional>