Mercurial > repos > pieterlukasse > prims_metabolomics

diff primsfilters.py @ 22:cd4f13119afa

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Small fix in filters part and improvement in query_metexp time logging
author pieter.lukasse@wur.nl
date Thu, 06 Mar 2014 14:29:55 +0100
parents c068ed713eb9
children
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--- a/primsfilters.py	Wed Mar 05 17:20:11 2014 +0100
+++ b/primsfilters.py	Thu Mar 06 14:29:55 2014 +0100
@@ -21,7 +21,9 @@
     """
     # for debugging: import pydevd;pydevd.settrace("L0136815.wurnet.nl")
     user = context.trans.user
-    metabolomics_tools = [ "msclust2", "combine_output", "create_poly_model", "lookup_library", "NDIStext2tabular", "rankfilterGCMS_tabular", "filter_on_rank" ]
+    metabolomics_tools = [ "msclust2", "combine_output", "create_poly_model", "lookup_library", 
+                          "NDIStext2tabular", "rankfilterGCMS_tabular", "filter_on_rank",
+                          "export_to_metexp_tabular", "query_metexp" ]
     found_match = False
     # iterate over the tool (partial)ids and look for a match (this is compatible with tool shed given ids):
     for partial_id in metabolomics_tools: