# HG changeset patch
# User pieter.lukasse@wur.nl
# Date 1415357116 -3600
# Node ID 664ccd5f7cf8a70352cd28c556b0bb960c1af1a7
# Parent  e67149fbff20871d3949c2dcc4ab78d035f674d5
small fix for png method

diff -r e67149fbff20 -r 664ccd5f7cf8 README.rst
--- a/README.rst	Thu Nov 06 16:14:44 2014 +0100
+++ b/README.rst	Fri Nov 07 11:45:16 2014 +0100
@@ -19,6 +19,7 @@
 ============== ======================================================================
 Date            Changes
 -------------- ----------------------------------------------------------------------
+November 2014  * Added XCMS related tool wrappers (for metaMS and diffreport)
 September 2014 * Added new membership cutoff option for final clusters in MsClust
                * Improved MsClust memory usage for large datasets 
                * Simplified MsClust HTML report
diff -r e67149fbff20 -r 664ccd5f7cf8 metaMS_cmd_interface.r
--- a/metaMS_cmd_interface.r	Thu Nov 06 16:14:44 2014 +0100
+++ b/metaMS_cmd_interface.r	Fri Nov 07 11:45:16 2014 +0100
@@ -76,7 +76,7 @@
 				{
 					figureName <- paste(args.htmlReportFile.files_path, "/figure", i,".png", sep="")
 					html <- paste(html,"<img src='", "figure", i,".png' />", sep="") 
-					png( figureName ) 
+					png( figureName, type="cairo" ) 
 					plot(eiccor, LC$xset@xcmsSet, groupidx = i)
 					devname = dev.off()
 				}