# HG changeset patch
# User pieter.lukasse@wur.nl
# Date 1389958985 -3600
# Node ID 80075a4c65439dfe9fcee5560d8c2156a37931ab
# Parent  2c1c9f0d8aa6735604786e7dd03e23792a213951
updated image paths

diff -r 2c1c9f0d8aa6 -r 80075a4c6543 msclust.xml
--- a/msclust.xml	Fri Jan 17 12:39:28 2014 +0100
+++ b/msclust.xml	Fri Jan 17 12:43:05 2014 +0100
@@ -197,7 +197,7 @@
 retention times of the putative ions to cluster them. Each cluster is then used to generate 
 one spectrum containing the clustered ions (peaks). 
 
-.. image:: $PATH_TO_IMAGES/msclust_summary.png 
+.. image:: msclust_summary.png 
 
 
 -----
@@ -237,7 +237,7 @@
 
 *Stop Criterion:* When to stop reducing and looking for new clusters. Lower values = more iterations 
 
-.. __: javascript:window.open('$PATH_TO_IMAGES/confidence_and_slope_params_explain.png','popUpWindow','height=700,width=800,left=10,top=10,resizable=yes,scrollbars=yes,toolbar=yes,menubar=no,location=no,directories=no,status=yes')
+.. __: javascript:window.open('confidence_and_slope_params_explain.png','popUpWindow','height=700,width=800,left=10,top=10,resizable=yes,scrollbars=yes,toolbar=yes,menubar=no,location=no,directories=no,status=yes')
 
 
 -----
@@ -250,7 +250,7 @@
 
 `Click here for more details on the Sample selection and Spectrum peak intensity correction algorithm parameters related to SPECTRA generation`_  
 
-.. _Click here for more details on the Sample selection and Spectrum peak intensity correction algorithm parameters related to SPECTRA generation: javascript:window.open('$PATH_TO_IMAGES/sample_sel_and_peak_height_correction.png','popUpWindow','height=700,width=800,left=10,top=10,resizable=yes,scrollbars=yes,toolbar=yes,menubar=no,location=no,directories=no,status=yes')
+.. _Click here for more details on the Sample selection and Spectrum peak intensity correction algorithm parameters related to SPECTRA generation: javascript:window.open('sample_sel_and_peak_height_correction.png','popUpWindow','height=700,width=800,left=10,top=10,resizable=yes,scrollbars=yes,toolbar=yes,menubar=no,location=no,directories=no,status=yes')
 
 -----
 
@@ -281,7 +281,7 @@
 
 `Click here for more details on the SIM output file`_  
 
-.. _Click here for more details on the SIM output file: javascript:window.open('$PATH_TO_IMAGES/sample_SIM.png','popUpWindow','height=700,width=800,left=10,top=10,resizable=yes,scrollbars=yes,toolbar=yes,menubar=no,location=no,directories=no,status=yes')
+.. _Click here for more details on the SIM output file: javascript:window.open('sample_SIM.png','popUpWindow','height=700,width=800,left=10,top=10,resizable=yes,scrollbars=yes,toolbar=yes,menubar=no,location=no,directories=no,status=yes')