Mercurial > repos > pieterlukasse > prims_metabolomics
changeset 54:10f3cb998c4e
small fix
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Thu, 11 Dec 2014 14:32:19 +0100 |
| parents | 70574a6381ea |
| children | 543958f75e83 |
| files | datatypes_conf.xml xcms_differential_analysis.r |
| diffstat | 2 files changed, 7 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- a/datatypes_conf.xml Thu Dec 11 14:09:27 2014 +0100 +++ b/datatypes_conf.xml Thu Dec 11 14:32:19 2014 +0100 @@ -6,4 +6,8 @@ <datatype extension="msclust.csv" type="galaxy.datatypes.tabular:Tabular" mimetype="text/csv" display_in_upload="true" subclass="true"> </datatype> </registration> + <registration display_path="display_applications"> + <datatype extension="rdata" type="galaxy.datatypes.data:Data" mimetype="application/zip" > + </datatype> + </registration> </datatypes> \ No newline at end of file
--- a/xcms_differential_analysis.r Thu Dec 11 14:09:27 2014 +0100 +++ b/xcms_differential_analysis.r Thu Dec 11 14:32:19 2014 +0100 @@ -49,6 +49,9 @@ # info: levels(xcmsSet@phenoData$class) also gives access to the class names dir.create(file.path(args.htmlReportFile.files_path), showWarnings = FALSE, recursive = TRUE) + # set cairo as default for png plots: + x11 = function (...) grDevices::x11(...,type='cairo') + # run diffreport reporttab <- diffreport(xsetData, args.class1, args.class2, paste(args.htmlReportFile.files_path,"/fig", sep=""), args.topcount, metlin = 0.15, h=480, w=640) # write out tsv table: