Mercurial > repos > pieterlukasse > prims_metabolomics
changeset 52:5b1adc49700d
small adjustment
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Thu, 11 Dec 2014 10:26:17 +0100 |
| parents | 684d2341968c |
| children | 70574a6381ea |
| files | metams_lcms_pick_and_group.xml |
| diffstat | 1 files changed, 7 insertions(+), 6 deletions(-) [+] |
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--- a/metams_lcms_pick_and_group.xml Thu Dec 11 10:10:18 2014 +0100 +++ b/metams_lcms_pick_and_group.xml Thu Dec 11 10:26:17 2014 +0100 @@ -9,7 +9,7 @@ $customMetaMSsettings $outputFile $xsetOut - $findAdducts_polarity + $polarity $htmlReportFile $htmlReportFile.files_path $outputLog @@ -20,6 +20,12 @@ <param name="protocolName" type="text" size="30" label="protocolName" value="e.g. Synapt.QTOF.RP" help="Choose a name to give for the specific settings in the parameters below"/><!-- TODO - let user choose this --> + <param name="polarity" type="select" size="30" label="polarity" + help="Which polarity mode was used for measuring of the ms sample"> + <option value="positive" selected="true">positive</option> + <option value="negative" >negative</option> + </param> + <!-- ===========NB : if peak picking, alignment OR CAMERA settings have to be reused for runGC wrapper in the future, we can use Galaxy macro expansions here to avoid defining these parameters again in the runGC wrapper ========================= --> @@ -178,11 +184,6 @@ <param name="findIsotopes_minfrac" type="float" size="10" value="0.5" label="(findIsotopes)minfrac" help="The ratio for the number of samples, which must satisfy the C12/C13 rule for isotope annotation" /> - <param name="findAdducts_polarity" type="select" size="30" label="(findAdducts)polarity" - help="Which polarity mode was used for measuring of the ms sample"> - <option value="positive" selected="true">positive</option> - <option value="negative" >negative</option> - </param> <param name="findAdducts_multiplier" type="integer" size="10" value="3" label="(findAdducts)multiplier" help="If no ruleset is provided, calculate ruleset with max. number n of [nM+x] clusterions" />