Mercurial > repos > pieterlukasse > prims_metabolomics

changeset 27:ecd3f6c9e606

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small fix to support spaces in parameters
author pieter.lukasse@wur.nl
date Thu, 01 May 2014 11:19:52 +0200
parents 637830ac8bcd
children b1015b9241cd
files export_to_metexp_tabular.xml
diffstat 1 files changed, 9 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/export_to_metexp_tabular.xml	Thu Apr 24 11:28:38 2014 +0200
+++ b/export_to_metexp_tabular.xml	Thu May 01 11:19:52 2014 +0200
@@ -3,8 +3,15 @@
     version="0.2.0">
   <description>Create tabular file for loading into METabolomics EXPlorer database</description>
   <command interpreter="python">
-    export_to_metexp_tabular.py $rankfilter_and_caslookup_combi $msclust_quant_file $output_result 
-    $organism $tissue $experiment_name $user_name $column_type
+    export_to_metexp_tabular.py 
+    $rankfilter_and_caslookup_combi 
+    $msclust_quant_file 
+    $output_result 
+    "$organism" 
+    "$tissue" 
+    "$experiment_name" 
+    "$user_name" 
+    "$column_type"
   </command>
   <inputs>
     <param format="tabular" name="rankfilter_and_caslookup_combi" type="data" label="RIQC-Combine RankFilter and CasLookup output"