Mercurial > repos > pieterlukasse > prims_metabolomics_r_dependencies

view INSTALL.r @ 2:16ad47f8751f

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
adding lib png and other options
author pieter.lukasse@wur.nl
date Fri, 07 Nov 2014 12:04:54 +0100
parents e6171a39dd04
children 0b8516e10ae3
line wrap: on
line source

# get  R http://cran.r-project.org/src/base/R-3/R-3.0.3.tar.gz

# installs Bioconductor
source("http://bioconductor.org/biocLite.R")
biocLite()

# upgrade? Some packages are "old"  and can be upgraded with: biocLite("BiocUpgrade")


#  install metaMS and multtest for differential analysis tool (from xcms)
biocLite("metaMS")
biocLite("multtest")

# for "multi-threading"  (actually starts multiple R processes for parallel processing):
install.packages("snow", repos="http://cran.rstudio.com/")