Mercurial > repos > pieterlukasse > prims_proteomics
comparison napq.xml @ 27:34c4e7e0f23b
type fix
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Fri, 30 Jan 2015 14:37:28 +0100 |
| parents | 17acaf080e76 |
| children | 6107b74eeb11 |
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| 26:17acaf080e76 | 27:34c4e7e0f23b |
|---|---|
| 82 </conditional> | 82 </conditional> |
| 83 | 83 |
| 84 </inputs> | 84 </inputs> |
| 85 <configfiles> | 85 <configfiles> |
| 86 <configfile name="identificationsConfigFile">## start comment | 86 <configfile name="identificationsConfigFile">## start comment |
| 87 apml | 87 ## iterate over the selected files and store their names in the config file |
| 88 #for $i, $s in enumerate( $identificationFileList ) | |
| 89 ${s.identificationsFile} | |
| 90 ## also print out the datatype in the next line, based on previously configured datatype | |
| 91 #if isinstance( $s.identificationsFile.datatype, $__app__.datatypes_registry.get_datatype_by_extension('apml').__class__): | |
| 92 apml | |
| 93 #else: | |
| 94 mzid | |
| 95 #end if | |
| 96 #end for | |
| 88 ## end comment</configfile> | 97 ## end comment</configfile> |
| 89 </configfiles> | 98 </configfiles> |
| 90 <outputs> | 99 <outputs> |
| 91 <data name="outputApml" format="apml" label="${tool.name} on ${on_string}: peptide quantifications (APML)"/> | 100 <data name="outputApml" format="apml" label="${tool.name} on ${on_string}: peptide quantifications (APML)"/> |
| 92 <data name="outputTsv" format="tabular" label="${tool.name} on ${on_string}: peptide quantifications (TSV)"/> | 101 <data name="outputTsv" format="tabular" label="${tool.name} on ${on_string}: peptide quantifications (TSV)"/> |