|
0
|
1 PRIMV-visualization toolset & Galaxy wrappers
|
|
|
2 =============================================
|
|
|
3
|
|
|
4 Visualization module of Plant Research International's Multi-purpose Views (PRIMV) toolsuite.
|
|
|
5
|
|
|
6 This toolset consists of tools that generate multi-purpose views to assist in the visualization
|
|
|
7 and interpretation of large and complex datasets.
|
|
|
8
|
|
|
9 Can be used a.o. in combination with PRIMS-MASSCOMB (prims_masscomb package) and
|
|
|
10 PRIMS-proteomics (prims_proteomics package).
|
|
|
11
|
|
|
12 Copyright 2010-2013 by Pieter Lukasse, Plant Research International (PRI),
|
|
|
13 Wageningen, The Netherlands. All rights reserved. See the license text below.
|
|
|
14
|
|
|
15 Galaxy wrappers and installation are available from the Galaxy Tool Shed at:
|
|
|
16 http://toolshed.g2.bx.psu.edu/view/pieterlukasse/primv_visualization
|
|
|
17
|
|
|
18 History
|
|
|
19 =======
|
|
|
20
|
|
|
21 ============== ========================================================================
|
|
|
22 Date Changes
|
|
|
23 -------------- ------------------------------------------------------------------------
|
|
|
24 January 2014 -first release via Tool Shed
|
|
|
25 November 2013 -cytoexport tool used internally at PRI
|
|
|
26 October 2012 -first tool for generating visually rich Cytoscape networks (cytoexport)
|
|
|
27 ============== ========================================================================
|
|
|
28
|
|
|
29 Tool Versioning
|
|
|
30 ===============
|
|
|
31
|
|
|
32 Tools will have versions of the form X.Y.Z. Versions
|
|
|
33 differing only after the second decimal should be completely
|
|
|
34 compatible with each other. Breaking changes should result in an
|
|
|
35 increment of the number before and/or after the first decimal. All
|
|
|
36 tools of version less than 1.0.0 should be considered beta.
|
|
|
37
|
|
|
38
|
|
|
39 Bug Reports & other questions
|
|
|
40 =============================
|
|
|
41
|
|
|
42 For the time being issues can be reported via the contact form at
|
|
|
43 http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm
|
|
|
44
|
|
|
45 Developers, Contributions & Collaborations
|
|
|
46 ==========================================
|
|
|
47
|
|
|
48 If you wish to join forces and collaborate on some of the
|
|
|
49 tools do not hesitate to contact Pieter Lukasse via the contact form above.
|
|
|
50
|
|
|
51 License (Apache, Version 2.0)
|
|
|
52 =============================
|
|
|
53
|
|
|
54 Copyright 2013 Pieter Lukasse, Plant Research International (PRI).
|
|
|
55
|
|
|
56 Licensed under the Apache License, Version 2.0 (the "License");
|
|
|
57 you may not use this software except in compliance with the License.
|
|
|
58 You may obtain a copy of the License at
|
|
|
59
|
|
|
60 http://www.apache.org/licenses/LICENSE-2.0
|
|
|
61
|
|
|
62 Unless required by applicable law or agreed to in writing, software
|
|
|
63 distributed under the License is distributed on an "AS IS" BASIS,
|
|
|
64 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
|
65 See the License for the specific language governing permissions and
|
|
|
66 limitations under the License.
|
|
|
67 |
