Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

annotate tool_dependencies.xml @ 3:3ab198df8f3f draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
author pjbriggs
date Thu, 18 Oct 2018 09:18:04 -0400
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children 86a12d75ebe4
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3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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1 <?xml version="1.0"?>
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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2 <tool_dependency>
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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3 <package name="amplicon_analysis_pipeline" version="1.2.3">
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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4 <install version="1.0">
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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5 <actions>
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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6 <action type="download_file">https://raw.githubusercontent.com/pjbriggs/Amplicon_analysis-galaxy/master/install_amplicon_analysis.sh</action>
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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7 <action type="shell_command">
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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8 sh ./install_amplicon_analysis.sh $INSTALL_DIR
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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9 </action>
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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10 <action type="set_environment">
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Amplicon_analysis-1.2.3/bin</environment_variable>
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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12 </action>
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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13 </actions>
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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14 </install>
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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15 </package>
3ab198df8f3f planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042
pjbriggs
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16 </tool_dependency>