Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

comparison install_tool_deps.sh @ 1:1c1902e12caf draft

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Updated to version 1.2.1.0
author pjbriggs
date Wed, 25 Apr 2018 03:54:00 -0400
parents 47ec9c6f44b8
children 43d6f81bc667
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0:47ec9c6f44b8 1:1c1902e12caf
32 python setup.py install --prefix=$install_dir --install-scripts=$install_dir/bin --install-lib=$install_dir/lib/python2.7/site-packages >>$INSTALL_DIR/INSTALLATION.log 2>&1 32 python setup.py install --prefix=$install_dir --install-scripts=$install_dir/bin --install-lib=$install_dir/lib/python2.7/site-packages >>$INSTALL_DIR/INSTALLATION.log 2>&1
33 EOF 33 EOF
34 popd 34 popd
35 rm -rf $wd/* 35 rm -rf $wd/*
36 rmdir $wd 36 rmdir $wd
37 }
38 function install_amplicon_analysis_pipeline_1_2_1() {
39 install_amplicon_analysis_pipeline $1 1.2.1
37 } 40 }
38 function install_amplicon_analysis_pipeline_1_1() { 41 function install_amplicon_analysis_pipeline_1_1() {
39 install_amplicon_analysis_pipeline $1 1.1 42 install_amplicon_analysis_pipeline $1 1.1
40 } 43 }
41 function install_amplicon_analysis_pipeline_1_0() { 44 function install_amplicon_analysis_pipeline_1_0() {
684 fi 687 fi
685 if [ ! -d "$TOP_DIR" ] ; then 688 if [ ! -d "$TOP_DIR" ] ; then
686 mkdir -p $TOP_DIR 689 mkdir -p $TOP_DIR
687 fi 690 fi
688 # Install dependencies 691 # Install dependencies
689 install_amplicon_analysis_pipeline_1_1 $TOP_DIR 692 install_amplicon_analysis_pipeline_1_2_1 $TOP_DIR
690 install_cutadapt_1_11 $TOP_DIR 693 install_cutadapt_1_11 $TOP_DIR
691 install_sickle_1_33 $TOP_DIR 694 install_sickle_1_33 $TOP_DIR
692 install_bioawk_27_08_2013 $TOP_DIR 695 install_bioawk_27_08_2013 $TOP_DIR
693 install_pandaseq_2_8_1 $TOP_DIR 696 install_pandaseq_2_8_1 $TOP_DIR
694 install_spades_3_5_0 $TOP_DIR 697 install_spades_3_5_0 $TOP_DIR