comparison amplicon_analysis_pipeline.xml @ 3:3ab198df8f3f draft

planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 15390f18b91d838880d952eb2714f689bbd8a042

2:43d6f81bc667

<tool id="amplicon_analysis_pipeline" name="Amplicon Analysis Pipeline" version="1.2.2.0">
  <description>analyse 16S rRNA data from Illumina Miseq paired-end reads</description>
  <requirements>
    <requirement type="package" version="1.2.2">amplicon_analysis_pipeline</requirement>
    <requirement type="package" version="1.11">cutadapt</requirement>
    <requirement type="package" version="1.33">sickle</requirement>
    <requirement type="package" version="27-08-2013">bioawk</requirement>
    <requirement type="package" version="2.8.1">pandaseq</requirement>
    <requirement type="package" version="3.5.0">spades</requirement>
    <requirement type="package" version="0.11.3">fastqc</requirement>
    <requirement type="package" version="1.8.0">qiime</requirement>
    <requirement type="package" version="2.2.26">blast</requirement>
    <requirement type="package" version="0.2.4">fasta-splitter</requirement>
    <requirement type="package" version="2.2">rdp-classifier</requirement>
    <requirement type="package" version="3.2.0">R</requirement>
    <requirement type="package" version="1.1.3">vsearch</requirement>
    <requirement type="package" version="2010-04-29">microbiomeutil</requirement>
    <requirement type="package">fasta_number</requirement>
  </requirements>
  <stdio>
    <exit_code range="1:" />
  </stdio>
  <command><![CDATA[

3:3ab198df8f3f

<tool id="amplicon_analysis_pipeline" name="Amplicon Analysis Pipeline" version="1.2.3.0">
  <description>analyse 16S rRNA data from Illumina Miseq paired-end reads</description>
  <requirements>
    <requirement type="package" version="1.2.3">amplicon_analysis_pipeline</requirement>
  </requirements>
  <stdio>
    <exit_code range="1:" />
  </stdio>
  <command><![CDATA[