Mercurial > repos > pjbriggs > amplicon_analysis_pipeline
comparison outputs.txt @ 4:86a12d75ebe4 draft default tip
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 7be61b7ed35ca3deaad68d2eae384c8cd365bcb8
| author | pjbriggs |
|---|---|
| date | Fri, 20 Dec 2019 06:59:49 -0500 |
| parents | |
| children |
comparison
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| 3:3ab198df8f3f | 4:86a12d75ebe4 |
|---|---|
| 1 ok.. Metatable_log/Metatable_mod.txt | |
| 2 ok.. Vsearch_OTU_tables/multiplexed_linearized_dereplicated_mc2_repset_nonchimeras_tax_OTU_table.biom | |
| 3 ok.. Vsearch_OTU_tables/otus.tre | |
| 4 ok.. RESULTS/Vsearch_gg/OTUs_count.txt | |
| 5 ok.. RESULTS/Vsearch_gg/table_summary.txt | |
| 6 ok.. Multiplexed_files/Vsearch_pipeline/multiplexed_linearized_dereplicated_mc2_repset_nonchimeras_OTUs.fasta | |
| 7 ok.. QUALITY_CONTROL/Reads_count.txt | |
| 8 ok.. fastqc_quality_boxplots.html -> generated by the Python wrapper | |
| 9 NO.. RESULTS/Vsearch_gg/Heatmap/js -> RESULTS/Vsearch_gg/Heatmap.pdf | |
| 10 NO.. RESULTS/Vsearch_gg/Heatmap/otu_table.html -> MISSING | |
| 11 ok.. RESULTS/Vsearch_gg/phylum_genus_charts/charts/ | |
| 12 ok.. RESULTS/Vsearch_gg/phylum_genus_charts/raw_data/ | |
| 13 ok.. RESULTS/Vsearch_gg/phylum_genus_charts/bar_charts.html | |
| 14 ok.. RESULTS/Vsearch_gg/beta_div_even/weighted_2d_plot/* | |
| 15 ok.. RESULTS/Vsearch_gg/beta_div_even/weighted_2d_plot/weighted_unifrac_pc_2D_PCoA_plots.html | |
| 16 ok.. RESULTS/Vsearch_gg/beta_div_even/unweighted_2d_plot/* | |
| 17 ok.. RESULTS/Vsearch_gg/beta_div_even/unweighted_2d_plot/unweighted_unifrac_pc_2D_PCoA_plots.html | |
| 18 ok.. RESULTS/Vsearch_gg/Alpha_diversity/rarefaction_curves/rarefaction_plots.html | |
| 19 ok.. RESULTS/Vsearch_gg/Alpha_diversity/rarefaction_curves/average_plots | |
| 20 ok.. RESULTS/Vsearch_gg/Alpha_diversity/Alpha_diversity_boxplot/Categories_shannon/*.pdf | |
| 21 | |
| 22 ??.. Metatable_log/Metatable_mod.txt | |
| 23 NO.. DADA2_OTU_tables/multiplexed_linearized_dereplicated_mc2_repset_nonchimeras_tax_OTU_table.biom | |
| 24 ok.. DADA2_OTU_tables/otus.tre | |
| 25 ok.. RESULTS/DADA2_silva/OTUs_count.txt | |
| 26 ok.. RESULTS/DADA2_silva/table_summary.txt | |
| 27 ok.. Multiplexed_files/DADA2_pipeline/multiplexed_linearized_dereplicated_mc2_repset_nonchimeras_OTUs.fasta --> DADA2_OTU_tables/seqs.fa | |
| 28 NO.. QUALITY_CONTROL/Reads_count.txt -> Vsearch only | |
| 29 ok.. fastqc_quality_boxplots.html -> generated by the Python wrapper | |
| 30 NO.. RESULTS/DADA2_silva/Heatmap/js -> RESULTS/DADA2_silva/Heatmap.pdf | |
| 31 NO.. RESULTS/DADA2_silva/Heatmap/otu_table.html | |
| 32 ok.. RESULTS/DADA2_silva/phylum_genus_charts/charts/ | |
| 33 ok.. RESULTS/DADA2_silva/phylum_genus_charts/raw_data/ | |
| 34 ok.. RESULTS/DADA2_silva/phylum_genus_charts/bar_charts.html | |
| 35 ok.. RESULTS/DADA2_silva/beta_div_even/weighted_2d_plot/* | |
| 36 ok.. RESULTS/DADA2_silva/beta_div_even/weighted_2d_plot/weighted_unifrac_pc_2D_PCoA_plots.html | |
| 37 ok.. RESULTS/DADA2_silva/beta_div_even/unweighted_2d_plot/* | |
| 38 ok.. RESULTS/DADA2_silva/beta_div_even/unweighted_2d_plot/unweighted_unifrac_pc_2D_PCoA_plots.html | |
| 39 ok.. RESULTS/DADA2_silva/Alpha_diversity/rarefaction_curves/rarefaction_plots.html | |
| 40 ok.. RESULTS/DADA2_silva/Alpha_diversity/rarefaction_curves/average_plots | |
| 41 ok.. RESULTS/DADA2_silva/Alpha_diversity/Alpha_diversity_boxplot/Categories_shannon/*.pdf -> missing? (didn't include categories?) |