diff test-data/ceas_out1.xls @ 0:f411ce97a351 draft

Uploaded initial version 1.0.2-2
author pjbriggs
date Tue, 30 Jun 2015 07:08:05 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ceas_out1.xls	Tue Jun 30 07:08:05 2015 -0400
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+# RefSeq: RefSeq ID
+# chr: chromosome of a RefSeq gene
+# txStart: 5' end of a RefSeq gene
+# txEnd: 3' end site of a RefSeq gene
+# strand: strand of a RefSeq gene
+# dist u TSS: Distance to the nearest ChIP region's center upstream of transcription start site (bp)
+# dist d TSS: Distance to the nearest ChIP region's center downstream of transcription start site (bp)
+# dist u TTS: Distance to the nearest ChIP region's center upstream of transcription end site (bp)
+# dist d TTS: Distance to the nearest ChIP region's center downstream of transcription end (bp)
+# 3000bp u TSS: Occupancy rate of ChIP region in 3000bp upstream of transcription start site (0.0 - 1.0)
+# 3000bp d TSS: Occupancy rate of ChIP region in 3000bp downstream of transcription start site (0.0 - 1.0)
+# 1/3 gene: Occupancy rate of ChIP region in 1/3 gene (0.0 - 1.0)
+# 2/3 gene: Occupancy rate of ChIP region in 2/3 gene (0.0 - 1.0)
+# 3/3 gene: Occupancy rate of ChIP region in 3/3 gene (0.0 - 1.0)
+# 3000bp d TTS: Occupancy rate of ChIP region in 3000bp downstream of transcriptino end (0.0 - 1.0)
+# exons: Occupancy rate of ChIP regions in exons (0.0-1.0)
+# Note that txStart and txEnd indicate 5' and 3' ends of genes whereas TSS and TTS transcription start and end sites in consideration of strand.
+#name	chr	txStart	txEnd	strand	dist u TSS	dist d TSS	dist u TTS	dist d TTS	3000bp u TSS	3000bp d TSS	1/3 gene	2/3 gene	3/3 gene	3000bp d TTS	exons
+NM_001031576	chr26	19281	27136	+	NA	4099848	NA	4091993	0	0	0	0	0	0	0
+NM_204615	chr26	57466	61594	-	4057535	NA	4061663	NA	0	0	0	0	0	0	0
+NM_001005431	chr26	65800	76175	-	4042954	NA	4053329	NA	0	0	0	0	0	0	0
+NM_001145491	chr26	91618	92166	-	4026963	NA	4027511	NA	0	0	0	0	0	0	0
+NM_204398	chr26	93069	97423	+	NA	4026060	NA	4021706	0	0	0	0	0	0	0
+NM_001305147	chr26	254661	282571	+	NA	3864468	NA	3836558	0	0	0	0	0	0	0
+NM_001305148	chr26	254661	282571	+	NA	3864468	NA	3836558	0	0	0	0	0	0	0
+NM_001012868	chr26	350397	355252	-	3763877	NA	3768732	NA	0	0	0	0	0	0	0
+NM_001031030	chr26	479573	493561	+	NA	3639556	NA	3625568	0	0	0	0	0	0	0
+NM_001305140	chr26	520705	526012	+	NA	3598424	NA	3593117	0	0	0	0	0	0	0
+NM_001031029	chr26	537101	565572	+	NA	3582028	NA	3553557	0	0	0	0	0	0	0
+NM_205248	chr26	537250	760479	+	NA	3581879	NA	3358650	0	0	0	0	0	0	0
+NM_204727	chr26	662969	683066	-	3436063	NA	3456160	NA	0	0	0	0	0	0	0
+NR_105475	chr26	669012	669122	-	3450007	NA	3450117	NA	0	0	0	0	0	0	0
+NM_205449	chr26	785617	794076	+	NA	3333512	NA	3325053	0	0	0	0	0	0	0
+NM_204681	chr26	897458	902049	-	3217080	NA	3221671	NA	0	0	0	0	0	0	0
+NM_001278156	chr26	905313	917094	-	3202035	NA	3213816	NA	0	0	0	0	0	0	0
+NM_204184	chr26	960209	964268	-	3154861	NA	3158920	NA	0	0	0	0	0	0	0
+NM_204316	chr26	974223	991244	+	NA	3144906	NA	3127885	0	0	0	0	0	0	0
+NM_001031028	chr26	993815	1003847	-	3115282	NA	3125314	NA	0	0	0	0	0	0	0
+NM_001006392	chr26	1024606	1047756	-	3071373	NA	3094523	NA	0	0	0	0	0	0	0
+NM_001039596	chr26	1073550	1080033	-	3039096	NA	3045579	NA	0	0	0	0	0	0	0
+NM_001031027	chr26	1090460	1096137	+	NA	3028669	NA	3022992	0	0	0	0	0	0	0
+NM_001031026	chr26	1096566	1104751	-	3014378	NA	3022563	NA	0	0	0	0	0	0	0
+NM_001030913	chr26	1122296	1132596	+	NA	2996833	NA	2986533	0	0	0	0	0	0	0
+NM_001171886	chr26	1220031	1222791	-	2896338	NA	2899098	NA	0	0	0	0	0	0	0
+NM_205054	chr26	1229703	1232833	+	NA	2889426	NA	2886296	0	0	0	0	0	0	0
+NM_204462	chr26	1234686	1236536	-	2882593	NA	2884443	NA	0	0	0	0	0	0	0
+NM_204463	chr26	1265724	1267989	-	2851140	NA	2853405	NA	0	0	0	0	0	0	0
+NM_001030378	chr26	1289091	1290386	-	2828743	NA	2830038	NA	0	0	0	0	0	0	0
+NM_001195554	chr26	1382510	1388447	+	NA	2736619	NA	2730682	0	0	0	0	0	0	0
+NM_001012548	chr26	1406905	1428443	+	NA	2712224	NA	2690686	0	0	0	0	0	0	0
+NR_031486	chr26	1442696	1442779	-	2676350	NA	2676433	NA	0	0	0	0	0	0	0
+NR_031487	chr26	1442896	1442979	-	2676150	NA	2676233	NA	0	0	0	0	0	0	0
+NM_205250	chr26	1472137	1474003	+	NA	2646992	NA	2645126	0	0	0	0	0	0	0
+NR_105486	chr26	1566398	1566508	-	2552621	NA	2552731	NA	0	0	0	0	0	0	0
+NM_001160320	chr26	1697226	1773801	+	NA	2421903	NA	2345328	0	0	0	0	0	0	0
+NM_001004709	chr26	1697226	1773801	+	NA	2421903	NA	2345328	0	0	0	0	0	0	0
+NM_001160324	chr26	1697226	1773801	+	NA	2421903	NA	2345328	0	0	0	0	0	0	0
+NM_001004493	chr26	1697226	1773801	+	NA	2421903	NA	2345328	0	0	0	0	0	0	0
+NM_001160323	chr26	1697226	1773801	+	NA	2421903	NA	2345328	0	0	0	0	0	0	0
+NM_001160322	chr26	1697226	1773801	+	NA	2421903	NA	2345328	0	0	0	0	0	0	0
+NM_001160321	chr26	1697226	1773801	+	NA	2421903	NA	2345328	0	0	0	0	0	0	0
+NM_001004395	chr26	1776431	1800083	+	NA	2342698	NA	2319046	0	0	0	0	0	0	0
+NM_001030914	chr26	1811042	1820368	-	2298761	NA	2308087	NA	0	0	0	0	0	0	0
+NM_204506	chr26	1823407	1843085	-	2276044	NA	2295722	NA	0	0	0	0	0	0	0
+NR_031488	chr26	1925941	1926037	-	2193092	NA	2193188	NA	0	0	0	0	0	0	0
+NM_213581	chr26	2070404	2084478	-	2034651	NA	2048725	NA	0	0	0	0	0	0	0
+NR_035298	chr26	2086590	2086691	-	2032438	NA	2032539	NA	0	0	0	0	0	0	0
+NR_105470	chr26	2094750	2094860	-	2024269	NA	2024379	NA	0	0	0	0	0	0	0
+NM_001030915	chr26	2117140	2128322	-	1990807	NA	2001989	NA	0	0	0	0	0	0	0
+NM_001031498	chr26	2175178	2177159	-	1941970	NA	1943951	NA	0	0	0	0	0	0	0
+NM_001008452	chr26	2305308	2315138	+	NA	1813821	NA	1803991	0	0	0	0	0	0	0
+NM_001006322	chr26	2315293	2325130	-	1793999	NA	1803836	NA	0	0	0	0	0	0	0
+NM_001004414	chr26	2373245	2375480	-	1743649	NA	1745884	NA	0	0	0	0	0	0	0
+NM_001044644	chr26	2390696	2401255	-	1717874	NA	1728433	NA	0	0	0	0	0	0	0
+NM_001031499	chr26	2425841	2429413	-	1689716	NA	1693288	NA	0	0	0	0	0	0	0
+NM_001033642	chr26	2445710	2453125	+	NA	1673419	NA	1666004	0	0	0	0	0	0	0
+NM_001033643	chr26	2469318	2475028	+	NA	1649811	NA	1644101	0	0	0	0	0	0	0
+NM_204664	chr26	2498398	2509349	+	NA	1620731	NA	1609780	0	0	0	0	0	0	0
+NR_031489	chr26	2511657	2511746	-	1607383	NA	1607472	NA	0	0	0	0	0	0	0
+NR_031490	chr26	2512568	2512648	-	1606481	NA	1606561	NA	0	0	0	0	0	0	0
+NR_105523	chr26	2669792	2669902	-	1449227	NA	1449337	NA	0	0	0	0	0	0	0
+NR_031491	chr26	2896046	2896142	+	NA	1223083	NA	1222987	0	0	0	0	0	0	0
+NM_001190924	chr26	2961382	2962268	+	NA	1157747	NA	1156861	0	0	0	0	0	0	0
+NM_001007881	chr26	2999189	3002725	+	NA	1119940	NA	1116404	0	0	0	0	0	0	0
+NM_204320	chr26	3006741	3011817	-	1107312	NA	1112388	NA	0	0	0	0	0	0	0
+NM_001030916	chr26	3035271	3039335	-	1079794	NA	1083858	NA	0	0	0	0	0	0	0
+NM_204151	chr26	3047964	3050306	-	1068823	NA	1071165	NA	0	0	0	0	0	0	0
+NM_204326	chr26	3124816	3214381	-	904748	NA	994313	NA	0	0	0	0	0	0	0
+NM_204336	chr26	3320769	3332327	+	NA	798360	NA	786802	0	0	0	0	0	0	0
+NM_204622	chr26	3339753	3358863	-	760266	NA	779376	NA	0	0	0	0	0	0	0
+NM_205515	chr26	3359016	3368964	+	NA	760113	NA	750165	0	0	0	0	0	0	0
+NM_001012843	chr26	3370712	3377196	+	NA	748417	NA	741933	0	0	0	0	0	0	0
+NM_001029849	chr26	3377655	3382628	-	736501	NA	741474	NA	0	0	0	0	0	0	0
+NM_001006323	chr26	3439841	3454783	-	664346	NA	679288	NA	0	0	0	0	0	0	0
+NR_035162	chr26	3455233	3455324	+	NA	663896	NA	663805	0	0	0	0	0	0	0
+NM_001012697	chr26	3516478	3545774	+	NA	602651	NA	573355	0	0	0	0	0	0	0
+NM_001030917	chr26	3590932	3597509	-	521620	NA	528197	NA	0	0	0	0	0	0	0
+NM_001031500	chr26	3597231	3600802	+	NA	521898	NA	518327	0	0	0	0	0	0	0
+NM_001040018	chr26	3629575	3631171	+	NA	489554	NA	487958	0	0	0	0	0	0	0
+NM_001257295	chr26	3698350	3701362	-	417767	NA	420779	NA	0	0	0	0	0	0	0
+NM_001257296	chr26	3701377	3715857	-	403272	NA	417752	NA	0	0	0	0	0	0	0
+NM_001012549	chr26	3735643	3742472	-	376657	NA	383486	NA	0	0	0	0	0	0	0
+NM_001030918	chr26	3742618	3760175	-	358954	NA	376511	NA	0	0	0	0	0	0	0
+NM_001006324	chr26	3760758	3765368	-	353761	NA	358371	NA	0	0	0	0	0	0	0
+NM_205063	chr26	3809805	3812700	+	NA	309324	NA	306429	0	0	0	0	0	0	0
+NM_001293109	chr26	3859074	3879130	-	239999	NA	260055	NA	0	0	0	0	0	0	0
+NM_001293108	chr26	3859074	3882051	-	237078	NA	260055	NA	0	0	0	0	0	0	0
+NR_102328	chr26	3916006	3918143	-	200986	NA	203123	NA	0	0	0	0	0	0	0
+NM_204728	chr26	3920817	3937442	-	181687	NA	198312	NA	0	0	0	0	0	0	0
+NM_001244905	chr26	4104910	4108376	+	NA	14219	NA	10753	0	0	0	0	0	0	0
+NM_001293166	chr26	4138324	4142325	-	NA	23196	NA	19195	0	0	0	0	0	0	0
+NM_001030919	chr26	4144091	4175943	+	24962	NA	56814	NA	0	0	0	0	0	0	0
+NM_001257297	chr26	4209891	4216177	+	90762	NA	97048	NA	0	0	0	0	0	0	0
+NM_001257298	chr26	4218028	4238067	+	98899	NA	118938	NA	0	0	0	0	0	0	0
+NM_205490	chr26	4375371	4380959	-	NA	261830	NA	256242	0	0	0	0	0	0	0
+NM_001305129	chr26	4391940	4397490	+	272811	NA	278361	NA	0	0	0	0	0	0	0
+NM_001271612	chr26	4433568	4438784	+	314439	NA	319655	NA	0	0	0	0	0	0	0
+NM_001030920	chr26	4498991	4730550	+	379862	NA	611421	NA	0	0	0	0	0	0	0
+NM_001030921	chr26	4541748	4544997	-	NA	425868	NA	422619	0	0	0	0	0	0	0
+NM_001006325	chr26	4548211	4559974	+	429082	NA	440845	NA	0	0	0	0	0	0	0
+NM_001037832	chr26	4571684	4576072	-	NA	456943	NA	452555	0	0	0	0	0	0	0
+NM_001080870	chr26	4578266	4580646	-	NA	461517	NA	459137	0	0	0	0	0	0	0
+NM_001080868	chr26	4578266	4580647	-	NA	461518	NA	459137	0	0	0	0	0	0	0
+NM_001030922	chr26	4730394	4744364	-	NA	625235	NA	611265	0	0	0	0	0	0	0
+NM_204877	chr26	4751619	4755464	-	NA	636335	NA	632490	0	0	0	0	0	0	0
+NM_001302134	chr26	4791084	4792014	+	671955	NA	672885	NA	0	0	0	0	0	0	0
+NM_001006327	chr26	4828534	4833077	-	NA	713948	NA	709405	0	0	0	0	0	0	0
+NM_001008453	chr26	4838545	4850970	-	NA	731841	NA	719416	0	0	0	0	0	0	0
+NM_001030923	chr26	4876559	4884910	+	757430	NA	765781	NA	0	0	0	0	0	0	0
+NM_204429	chr26	4897094	4901738	-	NA	782609	NA	777965	0	0	0	0	0	0	0
+NM_204967	chr26	4946735	4952662	-	NA	833533	NA	827606	0	0	0	0	0	0	0
+NM_204473	chr26	4990765	4993729	+	871636	NA	874600	NA	0	0	0	0	0	0	0
+NR_105623	chr26	5087926	5087980	-	NA	968851	NA	968797	0	0	0	0	0	0	0