Mercurial > repos > pjbriggs > macs21
comparison tool_dependencies.xml @ 2:00d73c812399 draft
Version 2.1.0-6: add sorting step in bigWig generation, and explicitly terminate tool on error from MACS2.
| author | pjbriggs |
|---|---|
| date | Wed, 22 Mar 2017 11:36:07 -0400 |
| parents | 02a01ea54722 |
| children |
comparison
equal
deleted
inserted
replaced
| 1:02a01ea54722 | 2:00d73c812399 |
|---|---|
| 6 </package> | 6 </package> |
| 7 <package name="R" version="3.1.2"> | 7 <package name="R" version="3.1.2"> |
| 8 <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 8 <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 9 </package> | 9 </package> |
| 10 <!-- Subset of UCSC tools --> | 10 <!-- Subset of UCSC tools --> |
| 11 <package name="ucsc_tools_for_macs21" version="1.0"> | 11 <package name="ucsc_tools_for_macs21" version="2.0"> |
| 12 <install version="1.0"> | 12 <install version="1.0"> |
| 13 <actions> | 13 <actions> |
| 14 <!-- fetchChromSizes --> | 14 <!-- fetchChromSizes --> |
| 15 <action type="download_binary"> | 15 <action type="download_binary"> |
| 16 <url_template architecture="x86_64" os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes</url_template> | 16 <url_template architecture="x86_64" os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes</url_template> |
| 22 <action type="download_binary"> | 22 <action type="download_binary"> |
| 23 <url_template architecture="x86_64" os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedClip</url_template> | 23 <url_template architecture="x86_64" os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedClip</url_template> |
| 24 </action> | 24 </action> |
| 25 <action type="chmod"> | 25 <action type="chmod"> |
| 26 <file mode="755">$INSTALL_DIR/bedClip</file> | 26 <file mode="755">$INSTALL_DIR/bedClip</file> |
| 27 </action> | |
| 28 <!-- bedSort --> | |
| 29 <action type="download_binary"> | |
| 30 <url_template architecture="x86_64" os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedSort</url_template> | |
| 31 </action> | |
| 32 <action type="chmod"> | |
| 33 <file mode="755">$INSTALL_DIR/bedSort</file> | |
| 27 </action> | 34 </action> |
| 28 <!-- bedGraphToBigWig --> | 35 <!-- bedGraphToBigWig --> |
| 29 <action type="download_binary"> | 36 <action type="download_binary"> |
| 30 <url_template architecture="x86_64" os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</url_template> | 37 <url_template architecture="x86_64" os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</url_template> |
| 31 </action> | 38 </action> |