Mercurial > repos > pjbriggs > macs21
comparison macs21_wrapper.xml @ 5:3c435705aca5 draft default tip
New version 2.1.2-galaxy1 (updates UCSC dependencies)
| author | pjbriggs |
|---|---|
| date | Tue, 27 Jun 2023 07:54:55 +0000 |
| parents | 11cf21ee4242 |
| children |
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| 4:11cf21ee4242 | 5:3c435705aca5 |
|---|---|
| 1 <tool id="macs2_1_peakcalling" name="MACS2.1.2" version="2.1.2.0"> | 1 <tool id="macs2_1_peakcalling" name="MACS2.1.2" version="2.1.2-galaxy1"> |
| 2 <description>Model-based Analysis of ChIP-Seq: peak calling</description> | 2 <description>Model-based Analysis of ChIP-Seq: peak calling</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="2.7">python</requirement> | 4 <requirement type="package" version="2.7">python</requirement> |
| 5 <requirement type="package" version="2.1.2">macs2</requirement> | 5 <requirement type="package" version="2.1.2">macs2</requirement> |
| 6 <requirement type="package" version="3.5">R</requirement> | 6 <requirement type="package" version="3.5">R</requirement> |
| 7 <requirement type="package" version="357">ucsc-fetchchromsizes</requirement> | 7 <requirement type="package" version="377">ucsc-fetchchromsizes</requirement> |
| 8 <requirement type="package" version="357">ucsc-bedclip</requirement> | 8 <requirement type="package" version="377">ucsc-bedclip</requirement> |
| 9 <requirement type="package" version="357">ucsc-bedsort</requirement> | 9 <requirement type="package" version="377">ucsc-bedsort</requirement> |
| 10 <requirement type="package" version="357">ucsc-bedgraphtobigwig</requirement> | 10 <requirement type="package" version="377">ucsc-bedgraphtobigwig</requirement> |
| 11 </requirements> | 11 </requirements> |
| 12 <version_command>macs2 --version</version_command> | 12 <version_command>macs2 --version</version_command> |
| 13 <command><![CDATA[ | 13 <command><![CDATA[ |
| 14 python $__tool_directory__/macs21_wrapper.py callpeak | 14 python $__tool_directory__/macs21_wrapper.py callpeak |
| 15 ## | 15 ## |