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New version 2.1.2-galaxy1 (updates UCSC dependencies)
author pjbriggs
date Tue, 27 Jun 2023 07:54:55 +0000
parents 11cf21ee4242
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55 This version has been substantially modified both to adapt it to MACS 2.1, and 55 This version has been substantially modified both to adapt it to MACS 2.1, and
56 to re-implement the internal workings of the tool to conform with current 56 to re-implement the internal workings of the tool to conform with current
57 practices in invoking commands from Galaxy, and to add new functionality. 57 practices in invoking commands from Galaxy, and to add new functionality.
58 58
59 ========== ====================================================================== 59 ============= =================================================================
60 Version Changes 60 Version Changes
61 ---------- ---------------------------------------------------------------------- 61 ------------- -----------------------------------------------------------------
62 2.1.2.0 - Update to use MACS 2.1.2 62 2.1.2-galaxy1 - Update UCSC tool dependencies to version 357
63 2.1.1.0 - Update to use MACS 2.1.1 and use conda to resolve dependencies 63 2.1.2.0 - Update to use MACS 2.1.2
64 2.1.0-6 - Add bedSort step into bigWig file generation; terminate with error 64 2.1.1.0 - Update to use MACS 2.1.1 and use conda to resolve dependencies
65 when MACS finishes with non-zero exit code. 65 2.1.0-6 - Add bedSort step into bigWig file generation; terminate with
66 2.1.0-5 - User must explicitly specify the format for the inputs (to allow 66 error when MACS finishes with non-zero exit code.
67 for paired-end data) 67 2.1.0-5 - User must explicitly specify the format for the inputs (to
68 2.1.0-4 - Remove 'bdgcmp' functionality. 68 allow for paired-end data)
69 2.1.0-3 - Add tool tests 69 2.1.0-4 - Remove 'bdgcmp' functionality.
70 2.1.0-2 - Add option to create bigWig file from bedGraphs; fix bug with -B 70 2.1.0-3 - Add tool tests
71 option; make --mfold defaults consistent. 71 2.1.0-2 - Add option to create bigWig file from bedGraphs; fix bug with
72 2.1.0-1 - Initial version 72 ``-B`` option; make ``--mfold`` defaults consistent.
73 ========== ====================================================================== 73 2.1.0-1 - Initial version
74 ============= =================================================================
74 75
75 76
76 Developers 77 Developers
77 ========== 78 ==========
78 79