diff test-data/test_MACS2.1.1_peaks.xls.re_match @ 3:4124781932db draft

Updated to MACS 2.1.1 and use conda for dependency resolution.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_MACS2.1.1_peaks.xls.re_match	Tue Mar 20 11:25:04 2018 -0400
@@ -0,0 +1,30 @@
+\#peaks\ file
+\#\ This\ file\ is\ generated\ by\ MACS\ version\ 2\.1\.1\.20160309
+\#\ Command\ line\:\ callpeak\ \-t\ \/tmp\/tmpHxmla3\/files\/000\/dataset\_9\.dat\ \-c\ \/tmp\/tmpHxmla3\/files\/000\/dataset\_10\.dat\ \-\-format\=BED\ \-\-name\=test\_MACS2\.1\.1\ \-\-bw\=300\ \-\-gsize\=775000000\.0\ \-\-nomodel\ \-\-extsize\=243\ \-\-qvalue\=0\.05\ \-B\ \-\-SPMR\ \-\-mfold\ 5\ 50\ \-\-keep\-dup\ 1
+\#\ ARGUMENTS\ LIST\:
+\#\ name\ \=\ test\_MACS2\.1\.1
+\#\ format\ \=\ BED
+\#\ ChIP\-seq\ file\ \=\ \[\'.*\'\]
+\#\ control\ file\ \=\ \[\'.*\'\]
+\#\ effective\ genome\ size\ \=\ 7\.75e\+08
+\#\ band\ width\ \=\ 300
+\#\ model\ fold\ \=\ \[5\,\ 50\]
+\#\ qvalue\ cutoff\ \=\ 5\.00e\-02
+\#\ Larger\ dataset\ will\ be\ scaled\ towards\ smaller\ dataset\.
+\#\ Range\ for\ calculating\ regional\ lambda\ is\:\ 1000\ bps\ and\ 10000\ bps
+\#\ Broad\ region\ calling\ is\ off
+\#\ Paired\-End\ mode\ is\ off
+\#\ MACS\ will\ save\ fragment\ pileup\ signal\ per\ million\ reads
+
+\#\ tag\ size\ is\ determined\ as\ 50\ bps
+\#\ total\ tags\ in\ treatment\:\ 50
+\#\ tags\ after\ filtering\ in\ treatment\:\ 50
+\#\ maximum\ duplicate\ tags\ at\ the\ same\ position\ in\ treatment\ \=\ 1
+\#\ Redundant\ rate\ in\ treatment\:\ 0\.00
+\#\ total\ tags\ in\ control\:\ 50
+\#\ tags\ after\ filtering\ in\ control\:\ 50
+\#\ maximum\ duplicate\ tags\ at\ the\ same\ position\ in\ control\ \=\ 1
+\#\ Redundant\ rate\ in\ control\:\ 0\.00
+\#\ d\ \=\ 243
+\#chr\	start\	end\	length\	abs\_summit\	pileup\	\-log10\(pvalue\)\	fold\_enrichment\	\-log10\(qvalue\)\	name
+chr26\	4118914\	4119282\	369\	4119130\	9\.00\	9\.13132\	6\.31632\	2\.51561\	test\_MACS2\.1\.1\_peak\_1