diff test-data/test_MACS2.1.1_peaks.xls.re_match~ @ 5:3c435705aca5 draft default tip

New version 2.1.2-galaxy1 (updates UCSC dependencies)

--- a/test-data/test_MACS2.1.1_peaks.xls.re_match~	Wed Dec 12 08:26:16 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,30 +0,0 @@
-\#peaks\ file
-\#\ This\ file\ is\ generated\ by\ MACS\ version\ 2\.1\.1\.20160309
-\#\ Command\ line\:\ callpeak\ \-t\ \/tmp\/tmpHxmla3\/files\/000\/dataset\_9\.dat\ \-c\ \/tmp\/tmpHxmla3\/files\/000\/dataset\_10\.dat\ \-\-format\=BED\ \-\-name\=test\_MACS2\.1\.1\ \-\-bw\=300\ \-\-gsize\=775000000\.0\ \-\-nomodel\ \-\-extsize\=243\ \-\-qvalue\=0\.05\ \-B\ \-\-SPMR\ \-\-mfold\ 5\ 50\ \-\-keep\-dup\ 1
-\#\ ARGUMENTS\ LIST\:
-\#\ name\ \=\ test\_MACS2\.1\.1
-\#\ format\ \=\ BED
-\#\ ChIP\-seq\ file\ \=\ \[\'\/tmp\/tmpHxmla3\/files\/000\/dataset\_9\.dat\'\]
-\#\ control\ file\ \=\ \[\'\/tmp\/tmpHxmla3\/files\/000\/dataset\_10\.dat\'\]
-\#\ effective\ genome\ size\ \=\ 7\.75e\+08
-\#\ band\ width\ \=\ 300
-\#\ model\ fold\ \=\ \[5\,\ 50\]
-\#\ qvalue\ cutoff\ \=\ 5\.00e\-02
-\#\ Larger\ dataset\ will\ be\ scaled\ towards\ smaller\ dataset\.
-\#\ Range\ for\ calculating\ regional\ lambda\ is\:\ 1000\ bps\ and\ 10000\ bps
-\#\ Broad\ region\ calling\ is\ off
-\#\ Paired\-End\ mode\ is\ off
-\#\ MACS\ will\ save\ fragment\ pileup\ signal\ per\ million\ reads
-
-\#\ tag\ size\ is\ determined\ as\ 50\ bps
-\#\ total\ tags\ in\ treatment\:\ 50
-\#\ tags\ after\ filtering\ in\ treatment\:\ 50
-\#\ maximum\ duplicate\ tags\ at\ the\ same\ position\ in\ treatment\ \=\ 1
-\#\ Redundant\ rate\ in\ treatment\:\ 0\.00
-\#\ total\ tags\ in\ control\:\ 50
-\#\ tags\ after\ filtering\ in\ control\:\ 50
-\#\ maximum\ duplicate\ tags\ at\ the\ same\ position\ in\ control\ \=\ 1
-\#\ Redundant\ rate\ in\ control\:\ 0\.00
-\#\ d\ \=\ 243
-\#chr\	start\	end\	length\	abs\_summit\	pileup\	\-log10\(pvalue\)\	fold\_enrichment\	\-log10\(qvalue\)\	name
-chr26\	4118914\	4119282\	369\	4119130\	9\.00\	9\.13132\	6\.31632\	2\.51561\	test\_MACS2\.1\.1\_peak\_1