view test-data/test_MACS2.1.0_peaks.xls.re_match @ 2:00d73c812399 draft

Version 2.1.0-6: add sorting step in bigWig generation, and explicitly terminate tool on error from MACS2.

\#peaks\ file
\#\ This\ file\ is\ generated\ by\ MACS\ version\ 2\.1\.0\.20140616
\#\ Command\ line\:\ callpeak\ \-t\ .* \-c\ .* \-\-format\=BED\ \-\-name\=test\_MACS2\.1\.0\ \-\-bw\=300\ \-\-gsize\=775000000\.0\ \-\-nomodel\ \-\-extsize\=243\ \-\-qvalue\=0\.05\ \-B\ \-\-SPMR\ \-\-mfold\ 5\ 50\ \-\-keep\-dup\ 1
\#\ ARGUMENTS\ LIST\:
\#\ name\ \=\ test\_MACS2\.1\.0
\#\ format\ \=\ BED
\#\ ChIP\-seq\ file\ \=\ \[\'.*\'\]
\#\ control\ file\ \=\ \[\'.*\'\]
\#\ effective\ genome\ size\ \=\ 7\.75e\+08
\#\ band\ width\ \=\ 300
\#\ model\ fold\ \=\ \[5\,\ 50\]
\#\ qvalue\ cutoff\ \=\ 5\.00e\-02
\#\ Larger\ dataset\ will\ be\ scaled\ towards\ smaller\ dataset\.
\#\ Range\ for\ calculating\ regional\ lambda\ is\:\ 1000\ bps\ and\ 10000\ bps
\#\ Broad\ region\ calling\ is\ off
\#\ MACS\ will\ save\ fragment\ pileup\ signal\ per\ million\ reads

\#\ tag\ size\ is\ determined\ as\ 50\ bps
\#\ total\ tags\ in\ treatment\:\ 50
\#\ tags\ after\ filtering\ in\ treatment\:\ 50
\#\ maximum\ duplicate\ tags\ at\ the\ same\ position\ in\ treatment\ \=\ 1
\#\ Redundant\ rate\ in\ treatment\:\ 0\.00
\#\ total\ tags\ in\ control\:\ 50
\#\ tags\ after\ filtering\ in\ control\:\ 50
\#\ maximum\ duplicate\ tags\ at\ the\ same\ position\ in\ control\ \=\ 1
\#\ Redundant\ rate\ in\ control\:\ 0\.00
\#\ d\ \=\ 243
\#chr\	start\	end\	length\	abs\_summit\	pileup\	\-log10\(pvalue\)\	fold\_enrichment\	\-log10\(qvalue\)\	name
chr26\	4118914\	4119282\	369\	4119130\	9\.00\	9\.13132\	6\.31632\	2\.51561\	test\_MACS2\.1\.0\_peak\_1