view test-data/test_MACS2.1.1_peaks.xls @ 3:4124781932db draft

Updated to MACS 2.1.1 and use conda for dependency resolution.

#peaks file
# This file is generated by MACS version 2.1.1.20160309
# Command line: callpeak -t /tmp/tmpHxmla3/files/000/dataset_9.dat -c /tmp/tmpHxmla3/files/000/dataset_10.dat --format=BED --name=test_MACS2.1.1 --bw=300 --gsize=775000000.0 --nomodel --extsize=243 --qvalue=0.05 -B --SPMR --mfold 5 50 --keep-dup 1
# ARGUMENTS LIST:
# name = test_MACS2.1.1
# format = BED
# ChIP-seq file = ['/tmp/tmpHxmla3/files/000/dataset_9.dat']
# control file = ['/tmp/tmpHxmla3/files/000/dataset_10.dat']
# effective genome size = 7.75e+08
# band width = 300
# model fold = [5, 50]
# qvalue cutoff = 5.00e-02
# Larger dataset will be scaled towards smaller dataset.
# Range for calculating regional lambda is: 1000 bps and 10000 bps
# Broad region calling is off
# Paired-End mode is off
# MACS will save fragment pileup signal per million reads

# tag size is determined as 50 bps
# total tags in treatment: 50
# tags after filtering in treatment: 50
# maximum duplicate tags at the same position in treatment = 1
# Redundant rate in treatment: 0.00
# total tags in control: 50
# tags after filtering in control: 50
# maximum duplicate tags at the same position in control = 1
# Redundant rate in control: 0.00
# d = 243
#chr	start	end	length	abs_summit	pileup	-log10(pvalue)	fold_enrichment	-log10(qvalue)	name
chr26	4118914	4119282	369	4119130	9.00	9.13132	6.31632	2.51561	test_MACS2.1.1_peak_1