Mercurial > repos > pjbriggs > motif_tools

annotate test-data/phix.fa @ 0:b67ea47730d3 draft

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Version 1.0.1.
author pjbriggs
date Wed, 21 Mar 2018 06:39:41 -0400
parents
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0
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
1 >gi|9626372|ref|NC_001422.1| Enterobacteria phage phiX174, complete genome
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
2 GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
3 GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
4 ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
5 TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
6 GATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
7 TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
8 TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
9 CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
10 TGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
11 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTAC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
12 GGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
13 CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCGGAAGGAG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
14 TGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
15 AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
16 CCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
17 TCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
18 TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
19 CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
20 GGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
21 GGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
22 ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
23 TCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
24 TCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
25 ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAAC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
26 CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
27 GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
28 CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGAC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
29 TAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
30 TATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
31 TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
32 AGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGAT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
33 TATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
34 ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAAC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
35 GCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
36 TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
37 TCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
38 TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
39 TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
40 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
41 AATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
42 CGGGCAATAACGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
43 TTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
44 CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
45 AGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
46 GGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
47 GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
48 TAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
49 CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
50 TTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
51 GATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGAC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
52 CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
53 TGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
54 AACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGAC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
55 TTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
56 CTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
57 TACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
58 TCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
59 CTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
60 TGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
61 ATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
62 TTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
63 ATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
64 GACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
65 CTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
66 GCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
67 GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
68 ATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
69 CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
70 CGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
71 GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
72 CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
73 CCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
74 TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACT
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
75 TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
76 TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
77 AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACC
b67ea47730d3 Version 1.0.1.
pjbriggs
parents:
diff changeset
78 TGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA